View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2270_low_17 (Length: 329)

Name: NF2270_low_17
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2270_low_17
NF2270_low_17
[»] chr4 (1 HSPs)
chr4 (193-306)||(5941198-5941311)
[»] chr2 (2 HSPs)
chr2 (95-146)||(36779993-36780044)
chr2 (20-88)||(36780061-36780126)
[»] chr8 (1 HSPs)
chr8 (95-146)||(1274455-1274506)
[»] chr7 (2 HSPs)
chr7 (95-146)||(32302953-32303004)
chr7 (20-79)||(32303030-32303086)
[»] chr3 (1 HSPs)
chr3 (52-88)||(22981179-22981215)


Alignment Details
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 193 - 306
Target Start/End: Complemental strand, 5941311 - 5941198
Alignment:
Q  193 gcgttagcgtcggatacgtcgatcatattcagtcaccggttagttctcctatctttcttgttcacgttcattgagatatgttgagagaatgaatttggga 292  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  5941311 gcgttagcatcggatacgtcgatcatattcagtcaccggttagttctcctatctttctcgttcacgttcattgagatatgttgagagaatgaatttgggc 5941212  T
Q  293 tcaatgatgatgca 306  Q
    ||||||||||||||    
T  5941211 tcaatgatgatgca 5941198  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 36780044 - 36779993
Alignment:
Q  95 gtgttgttaaatgagactttttaatctcatccatttagttttaatctaaagg 146  Q
    ||||||| |||||| ||||||||||||||||| ||||||||||||| |||||    
T  36780044 gtgttgtaaaatgaaactttttaatctcatccgtttagttttaatccaaagg 36779993  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 36780126 - 36780061
Alignment:
Q  20 ttaattgttggaaatgccgtgagaaaacgaaggatgaagcggttaggaagaattaaaagaggtgataga 88  Q
    ||||||||||||||||  ||||| | | |||| |||||||||||||||||||||||||||  |||||||    
T  36780126 ttaattgttggaaatg--gtgagcagatgaag-atgaagcggttaggaagaattaaaagaaatgataga 36780061  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 1274455 - 1274506
Alignment:
Q  95 gtgttgttaaatgagactttttaatctcatccatttagttttaatctaaagg 146  Q
    ||||||||||||||| |||||||||||||  || ||| ||||||||||||||    
T  1274455 gtgttgttaaatgaggctttttaatctcagtcaattaattttaatctaaagg 1274506  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 32303004 - 32302953
Alignment:
Q  95 gtgttgttaaatgagactttttaatctcatccatttagttttaatctaaagg 146  Q
    ||||||| |||||| ||||||||||||||||  ||||||||||||| |||||    
T  32303004 gtgttgtaaaatgaaactttttaatctcatctgtttagttttaatccaaagg 32302953  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 32303086 - 32303030
Alignment:
Q  20 ttaattgttggaaatgccgtgagaaaacgaaggatgaagcggttaggaagaattaaaaga 79  Q
    ||||||||||||||||  ||||| | | |||| |||||||||||||||||||||||||||    
T  32303086 ttaattgttggaaatg--gtgagcagatgaag-atgaagcggttaggaagaattaaaaga 32303030  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 22981179 - 22981215
Alignment:
Q  52 gatgaagcggttaggaagaattaaaagaggtgataga 88  Q
    ||||||||||||||||||||||||||||  |||||||    
T  22981179 gatgaagcggttaggaagaattaaaagaaatgataga 22981215  T

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