View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2270_low_19 (Length: 306)

Name: NF2270_low_19
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2270_low_19
NF2270_low_19
[»] chr4 (4 HSPs)
chr4 (69-255)||(43511286-43511486)
chr4 (160-247)||(39429897-39429984)
chr4 (1-40)||(43511240-43511279)
chr4 (166-247)||(39429232-39429313)
[»] chr8 (2 HSPs)
chr8 (160-247)||(42346065-42346152)
chr8 (166-247)||(42345401-42345482)
[»] chr5 (4 HSPs)
chr5 (160-247)||(1969780-1969867)
chr5 (160-247)||(9923389-9923476)
chr5 (214-247)||(4606943-4606976)
chr5 (219-247)||(12201437-12201465)
[»] chr3 (2 HSPs)
chr3 (160-247)||(43768719-43768806)
chr3 (219-247)||(47480567-47480595)
[»] chr2 (1 HSPs)
chr2 (160-247)||(20991979-20992066)
[»] chr7 (1 HSPs)
chr7 (160-206)||(32871141-32871187)
[»] chr1 (2 HSPs)
chr1 (160-247)||(50428106-50428193)
chr1 (219-247)||(29334907-29334935)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 69 - 255
Target Start/End: Original strand, 43511286 - 43511486
Alignment:
Q  69 taaatgatggcaaatgttctaagtgtattccccttaacaacgacaaaatgtgatttaagggtgcataaatagtaagtacaaagta-------------ag 155  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||             |     
T  43511286 taaatgatggcaaatgttgtaattgtattccccttaacaacgacaaaatgtgatttaagggtgcataaaaagtaagtacaaaataatattagacagacaa 43511385  T
Q  156 taca-gtggggtttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttatgcaccat 254  Q
    |||| |||||||||| ||||| ||||||||||||||||||| ||||| ||||       |||||||||||||||| ||||||||||||||||||||||||    
T  43511386 tacaggtggggtttagcatggaaatgaggagttgtttcctatcattgaaaagtttttttcaactattaaattaaaaaggagtattaattttatgcaccat 43511485  T
Q  255 a 255  Q
    |    
T  43511486 a 43511486  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 39429984 - 39429897
Alignment:
Q  160 gtggggtttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 247  Q
    |||||||||| ||||||||||  ||||||||||| ||||| ||||||       |||| |||||||||||||||||||||||||||||    
T  39429984 gtggggtttagcatgggaatggagagttgtttcccaccatgggaaagtttttttcaaccattaaattaaagaggagtattaattttat 39429897  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43511240 - 43511279
Alignment:
Q  1 aaattttaactatcgccgatcaattcattcaacacttatc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43511240 aaattttaactatcgccgatcaattcattcaacacttatc 43511279  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 39429232 - 39429313
Alignment:
Q  166 tttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 247  Q
    |||| ||||||||||  ||||||||||||||||| ||||||       |||| |||| ||||| ||||||||||||||||||    
T  39429232 tttagcatgggaatggagagttgtttcctaccatgggaaagtttttttcaaccattagattaaggaggagtattaattttat 39429313  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 42346152 - 42346065
Alignment:
Q  160 gtggggtttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 247  Q
    |||||||||| ||||||||||  ||||||||||| | ||| ||||||       |||| |||| ||||||||||||||||||||||||    
T  42346152 gtggggtttagcatgggaatggagagttgtttcccatcatgggaaagtttttttcaaccattagattaaagaggagtattaattttat 42346065  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 42345401 - 42345482
Alignment:
Q  166 tttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 247  Q
    |||| ||||||||||  ||||||||||| ||||| ||||||       |||| |||| ||||| ||||||||||||||||||    
T  42345401 tttagcatgggaatggagagttgtttcccaccatgggaaagtttttttcaaccattagattaaggaggagtattaattttat 42345482  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 1969780 - 1969867
Alignment:
Q  160 gtggggtttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 247  Q
    |||||||||| ||||||||||  |||||||||  |||||| ||||||       |||| |||| ||||||||||||||||||||||||    
T  1969780 gtggggtttagcatgggaatggagagttgttttttaccatgggaaagtttttttcaaccattagattaaagaggagtattaattttat 1969867  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 9923389 - 9923476
Alignment:
Q  160 gtggggtttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 247  Q
    |||||||||| ||||||||||  ||||||||||| ||||| | ||||       |||| |||| ||||||||||||||||||||||||    
T  9923389 gtggggtttagcatgggaatggagagttgtttcccaccatggaaaagtttttttcaaccattagattaaagaggagtattaattttat 9923476  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 4606943 - 4606976
Alignment:
Q  214 caactattaaattaaagaggagtattaattttat 247  Q
    |||| |||||||||||||||||||||||||||||    
T  4606943 caaccattaaattaaagaggagtattaattttat 4606976  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 12201437 - 12201465
Alignment:
Q  219 attaaattaaagaggagtattaattttat 247  Q
    |||||||||||||||||||||||||||||    
T  12201437 attaaattaaagaggagtattaattttat 12201465  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 43768806 - 43768719
Alignment:
Q  160 gtggggtttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 247  Q
    |||||||||| ||||||||||  ||||||||| | ||||| ||||||       |||| |||| ||||||||||||||||||||||||    
T  43768806 gtggggtttagcatgggaatggagagttgttttccaccatgggaaagtttttttcaaccattagattaaagaggagtattaattttat 43768719  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 47480567 - 47480595
Alignment:
Q  219 attaaattaaagaggagtattaattttat 247  Q
    |||||||||||||||||||||||||||||    
T  47480567 attaaattaaagaggagtattaattttat 47480595  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 20992066 - 20991979
Alignment:
Q  160 gtggggtttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 247  Q
    |||||||||| ||||||||||  ||||||||| | ||||| ||||||       |||| |||| ||||||||||||||||||||||||    
T  20992066 gtggggtttagcatgggaatggagagttgttttccaccatgggaaagtttttttcaaccattagattaaagaggagtattaattttat 20991979  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 32871187 - 32871141
Alignment:
Q  160 gtggggtttatcatgggaatgaggagttgtttcctaccattggaaag 206  Q
    |||||||||| |||||||||| |||||||||||| ||||| ||||||    
T  32871187 gtggggtttagcatgggaatggggagttgtttcccaccataggaaag 32871141  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 50428193 - 50428106
Alignment:
Q  160 gtggggtttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 247  Q
    ||||||||||  |||||||||  ||||||||| | | ||| ||||||       |||| |||||||||||||||||||||||||||||    
T  50428193 gtggggtttagaatgggaatggagagttgttttccatcatgggaaagtttttttcaaccattaaattaaagaggagtattaattttat 50428106  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 247
Target Start/End: Complemental strand, 29334935 - 29334907
Alignment:
Q  219 attaaattaaagaggagtattaattttat 247  Q
    |||||||||||||||||||||||||||||    
T  29334935 attaaattaaagaggagtattaattttat 29334907  T

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