View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2270_low_24 (Length: 254)
Name: NF2270_low_24
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 10987453 - 10987321
Alignment:
| Q |
108 |
acccaaactcgattgtttcttccaaaccccacaacaacccattcaagcataacaacaagaccaaacaaacgcattaagctatcaccaacttagcaaaaca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10987453 |
acccaaactcgattgtttcttccaaaccccacaacaacccattcaagcataacaacaagaccaaacaaacgcattaagctatcaccaacacagcaaaaca |
10987354 |
T |
|
| Q |
208 |
aatcctcttccttcttcaaaacaagttccaaaa |
240 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
10987353 |
aatcctctttcttcttcaaaacaagttccaaaa |
10987321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 41867713 - 41867568
Alignment:
| Q |
108 |
acccaaactcgattgtttcttccaaaccccacaacaacccattcaagcataacaacaagacca-------------aacaaacgcattaagctatcacca |
194 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41867713 |
acccaaactcgatcgtttcttccaaaccccacaacaacccattcaagcataacaacaagaccaaacagaagaaccaaacaaacgcattaagctatcacca |
41867614 |
T |
|
| Q |
195 |
acttagcaaaacaaatcctcttccttcttcaaaacaagttccaaaa |
240 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41867613 |
acacagcaaaacaaatcctctttcttcttcaaaacaagttccaaaa |
41867568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 1973920 - 1973776
Alignment:
| Q |
108 |
acccaaactcgattgtttcttccaaaccccacaacaacccattcaagcataacaacaagaccaaaca-------------aacgcattaagctatcacca |
194 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
1973920 |
acccaaactcgatcgtttcttccaaaccccaca-caaaccattcaagcataacaacaagaccaaacagaagaaccaaacaaacgcattaagctatcacaa |
1973822 |
T |
|
| Q |
195 |
acttagcaaaacaaatcctcttccttcttcaaaacaagttccaaaa |
240 |
Q |
| |
|
|| ||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
1973821 |
acacagcaaaacaaaacctctttcttcttcaaaacaagttccaaaa |
1973776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 43285775 - 43285718
Alignment:
| Q |
108 |
acccaaactcgattgtttcttccaaaccccacaacaacccattcaagcataacaacaa |
165 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43285775 |
acccaaactcgatcgtttcttccaaaccccacaacaacccattcaagcagaacaacaa |
43285718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University