View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2270_low_26 (Length: 252)
Name: NF2270_low_26
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_low_26 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 53425107 - 53424863
Alignment:
| Q |
8 |
aggagcagagagaaatacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggt |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53425107 |
aggatcagagagaaatacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggt |
53425008 |
T |
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| Q |
108 |
agtaacaaagttatcaaggtacaatctatagcgctctgcggtatatcaannnnnnnnnnnnnnnnnnnnnnnnncaatgatatatttctcatgtttgata |
207 |
Q |
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| T |
53425007 |
agtaacaaagttatcaaggtacaatctatagcgctctgcggtatatcaatttattttttaatttttttaattttcaatgatatatttctcatgtttgata |
53424908 |
T |
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| Q |
208 |
attgttattgttaagggtcaagccataaatttcacccctctttca |
252 |
Q |
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| T |
53424907 |
attgttattgttaagggtcaagccataaatttcacccctctttca |
53424863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 48372459 - 48372558
Alignment:
| Q |
31 |
ttaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaaggtaca |
130 |
Q |
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| T |
48372459 |
ttaatgatgcaccttggatattaacggttgctgccaccactattgaccgtgactttcagtccaatgttgtcttgggtaataacaaagttgtcaaggtaca |
48372558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 26097609 - 26097502
Alignment:
| Q |
23 |
tacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatc |
122 |
Q |
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| T |
26097609 |
tacagttgttaatgacgctccttggatactaacggttgctgccactaccattgatcgtgactttcagtccaatgttgtcttgggtaataacaaagttgtc |
26097510 |
T |
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| Q |
123 |
aaggtaca |
130 |
Q |
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|||||||| |
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| T |
26097509 |
aaggtaca |
26097502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 53309082 - 53308963
Alignment:
| Q |
23 |
tacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatc |
122 |
Q |
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| T |
53309082 |
tacagttgttaatgacgctccttggatattaactgttgtagccactaccatcgattgtgatatgcagtccaacgttgttttaggtagtggcaaagttatt |
53308983 |
T |
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| Q |
123 |
aaggtacaatctatagcgct |
142 |
Q |
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| T |
53308982 |
gaggtacaatttataacgct |
53308963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 53432241 - 53432124
Alignment:
| Q |
15 |
gagagaaatacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaaca |
114 |
Q |
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||||||| |||| ||| |||||||||||||||||| || || |||| ||||| ||||| || ||||| |||||||||| |||| ||||||| ||| |
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| T |
53432241 |
gagagaagtacacttactaatgatgctccttggatattaaccgttggtgccacaactattgaccgtgaatttcagtccaacgttgtcttgggtaataaag |
53432142 |
T |
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| Q |
115 |
aagttatcaaggtacaat |
132 |
Q |
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| T |
53432141 |
aagttatcaaggtacaat |
53432124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 53320858 - 53320744
Alignment:
| Q |
23 |
tacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatc |
122 |
Q |
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||||||| |||||||||||| ||||| || || |||| |||||| || || || |||||||| ||||| ||| |||| ||||||| | |||||| ||| |
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| T |
53320858 |
tacagtttctaatgatgctccctggatattaaccgttggagccacaacaattgaccgtgatctccagtctaatgttgtcttgggtaatggcaaagtgatc |
53320759 |
T |
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| Q |
123 |
aaggtacaatctata |
137 |
Q |
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||||||||| ||||| |
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| T |
53320758 |
aaggtacaaactata |
53320744 |
T |
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