View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2270_low_3 (Length: 598)

Name: NF2270_low_3
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2270_low_3
NF2270_low_3
[»] chr1 (2 HSPs)
chr1 (253-586)||(3734007-3734348)
chr1 (1-206)||(3734391-3734596)
[»] chr3 (1 HSPs)
chr3 (71-172)||(48289018-48289119)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 253 - 586
Target Start/End: Complemental strand, 3734348 - 3734007
Alignment:
Q  253 gtgattgcaggaattattataggtgttcagtggaggggtgtcctgtnnnnnnnngagttgagagagataataatgattcgagttatgtgataacaactta 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  3734348 gtgattgcaggaattattataggtgttcagtggaggggtgtcctgtaaaaaaaagagttgagagagataataatgattcgagttatgtgataacaactta 3734249  T
Q  353 tgaaggcatgcacacccatccaaattcttgctagctcaaacataatatgaagaagttcttt-------------actaatgttactagtattcctacatg 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||    
T  3734248 tgaaggcatgcacacccatccaaattcttgctagctcaaacataatatgaagaagttctttgctgcatgctcttactaatgttactagtattcctacatg 3734149  T
Q  440 aaaatattcaaattcccaacaagtttgagtttgcaattgctcatgtacaatttaccttaaaaagggttttgaactttgaagaatatatatacaaagctta 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3734148 aaaatattcaaattcccaacaagtttgagtttgcaattgctcatgtacaatttactttaaaaagggttttgaactttgaagaatatatatacaaagctta 3734049  T
Q  540 gtcagcaaataactatacattactattcatctagattcggttatatt 586  Q
    |||||||||||||||     |||||||||||||||||||||||||||    
T  3734048 gtcagcaaataacta-----tactattcatctagattcggttatatt 3734007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 3734596 - 3734391
Alignment:
Q  1 atgttttaggagatactaataatatgaatatgagtggaaacgagaattggaagaaggaagttaaggaaagagttgcattcaaaacaaagtcactgattga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3734596 atgttttaggagatactaataatatgaatatgagtggaaacgagaattggaagaaggaagttaaggaaagagttgcattcaaaacaaagtcactgattga 3734497  T
Q  101 aatacttgatgatgggtacagatggaggaagtatggaaagaaaatggttaagaatagccctaatccaaggtatatgtattggaataccatgaaattaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3734496 aatacttgatgatgggtacagatggaggaagtatggaaagaaaatggttaagaatagccctaatccaaggtatatatattggaataccatgaaattaatt 3734397  T
Q  201 gataac 206  Q
    ||||||    
T  3734396 gataac 3734391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 48289119 - 48289018
Alignment:
Q  71 agttgcattcaaaacaaagtcactgattgaaatacttgatgatgggtacagatggaggaagtatggaaagaaaatggttaagaatagccctaatccaagg 170  Q
    ||||||||||||||| ||||||  | ||||||| || |||||||||| ||||||||||||||| |||||||| ||||| || || ||||| |||||||||    
T  48289119 agttgcattcaaaaccaagtcagaggttgaaattctggatgatgggttcagatggaggaagtacggaaagaagatggtgaaaaacagccccaatccaagg 48289020  T
Q  171 ta 172  Q
    ||    
T  48289019 ta 48289018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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