View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2270_low_33 (Length: 237)
Name: NF2270_low_33
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 48172169 - 48171949
Alignment:
| Q |
1 |
tgtatctgttttgataattttatacttgtaactgctgagcaggcacaaccaatatttagagatcctaaaagatatggagatatggcagatccaaatctga |
100 |
Q |
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| T |
48172169 |
tgtatctgttttgataattttatacttgtaactgctgagcaggcacaaccaatatttagagatcctaaaagatatggagatatggcagatccaaatctga |
48172070 |
T |
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| Q |
101 |
ataaaaattatccagaaaaggatctgaatcaagttgttgcaattgcagccatgtgcttacaagaggaatcagcagcgcgtcctttgatgagtgatgttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48172069 |
ataaaaattatccagaaaaggatctgaatcaagttgttgcaattgcagccatgtgcttacaagaggaatcagcagcgcgtcctttgatgagtgatgttgt |
48171970 |
T |
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| Q |
201 |
aactgctttgagttttctttc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
48171969 |
aactgctttgagttttctttc |
48171949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 221
Target Start/End: Original strand, 35288401 - 35288544
Alignment:
| Q |
78 |
agatatggcagatccaaatctgaataaaaattatccagaaaaggatctgaatcaagttgttgcaattgcagccatgtgcttacaagaggaatcagcagcg |
177 |
Q |
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|||||||||||||||| ||| || ||| | | |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||| ||| |
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| T |
35288401 |
agatatggcagatccacttctcaacaaacaattcccagaaaaggatcttaatcaagctgttgcaatagcagccatgtgcttacaagaggaaccagaagct |
35288500 |
T |
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| Q |
178 |
cgtcctttgatgagtgatgttgtaactgctttgagttttctttc |
221 |
Q |
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| T |
35288501 |
cgtcctttgatcggcgacgttgtgaccgctctgagttttctttc |
35288544 |
T |
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