View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2270_low_34 (Length: 235)
Name: NF2270_low_34
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 39493978 - 39493752
Alignment:
| Q |
1 |
atgaggaagaggttttgcactttttattttatatgatattttatgaagtttatatagtcaacttgatttaccgattcttcaataaaatattgagaaagcc |
100 |
Q |
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| T |
39493978 |
atgaggaagaggttttgcactttttattttatatgatattttatgaagtttatatagtcaacttgatttaccgattcttcaataaaatattgagaaagc- |
39493880 |
T |
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| Q |
101 |
taaaatatgcgcagctaatcatgcagttacatcatgcacaggtaatcaattaagtcccgtcattgatgaaagaagtttgatgttgctctcatgtgagcaa |
200 |
Q |
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| T |
39493879 |
taaaatatgcgcagctaatcatgcagttacatcatacacaggtaatcaattaagtcccgtcattgatgaaagaagtttgatgttgctctcatctgagcaa |
39493780 |
T |
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| Q |
201 |
actgatgagcttgagttgtttgatgatg |
228 |
Q |
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| T |
39493779 |
actgatgagcttgagttgtttgatgatg |
39493752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 39144245 - 39144465
Alignment:
| Q |
8 |
agaggttttgcacttttt-attttatatgatattttatgaagtttatatagtcaacttgatttaccgattcttcaataaaatattgagaaagcctaaaat |
106 |
Q |
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| T |
39144245 |
agaggtttttcactctttcattttatataatattttatgaagtttatattgtcaccttggtttaccgattcttcaaaaaaatattgagaaagc-taaaat |
39144343 |
T |
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| Q |
107 |
atgcgcagctaatcatgcagttacatcatgcacaggtaatcaattaagtcccgtcattgatgaaagaagtttgatgttgctctcatgtgagcaaactgat |
206 |
Q |
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| T |
39144344 |
atgtgcaactaattatgcagttacatcatacataggtaatcaattaagtcccgacattgatgaaagaagtttgatgttgctctcatgtgagcaaactgat |
39144443 |
T |
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| Q |
207 |
gagcttgagttgtttgatgatg |
228 |
Q |
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| T |
39144444 |
gagcttgagttgtttgatgatg |
39144465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 39426067 - 39425846
Alignment:
| Q |
8 |
agaggttttgcacttttt-attttatatgatattttatgaagtttatatagtcaacttgatttaccgattcttcaataaaatattgagaaagcctaaaat |
106 |
Q |
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| T |
39426067 |
agaggtttttcactatttcatgttatataacattatataaagtatatattgtcaccttgatttaccaatccttcaaataaatactgaggaagcttaaa-t |
39425969 |
T |
|
| Q |
107 |
atgcgc-agctaatcatgcagttacatcatgcacaggtaatcaattaagtcccgtcattgatgaaagaagtttgatgttgctctcatgtgagcaaactga |
205 |
Q |
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| T |
39425968 |
atgtgctagctaattatgcagttacatcgtacacatgtaatcaattaagtcccgccattgatgaaagaagtttgatgttgctcccatgtgagcaaacaga |
39425869 |
T |
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| Q |
206 |
tgagcttgagttgtttgatgatg |
228 |
Q |
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| T |
39425868 |
ggaacttgagttgtctgacgatg |
39425846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 42 - 216
Target Start/End: Complemental strand, 39189252 - 39189079
Alignment:
| Q |
42 |
tatgaagtttatatagtcaacttgatttaccgattcttcaataaaatattgagaaagcctaaaatatgcgc-agctaatcatgcagttacatcatgcaca |
140 |
Q |
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|||||||||||||| |||| |||||||||| || |||||||||| || |||| |||| |||| ||| || ||||||| ||||||||||||| | |||| |
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| T |
39189252 |
tatgaagtttatattgtcaccttgatttactgaaccttcaataaa-tactgaggaagcttaaa-tatctgctagctaattatgcagttacatcgtacaca |
39189155 |
T |
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| Q |
141 |
ggtaatcaattaagtcccgtcattgatgaaagaagtttgatgttgctctcatgtgagcaaactgatgagcttgagt |
216 |
Q |
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| T |
39189154 |
ggtaatcaattaagtcccaccgttgatgaaagaagtttgatgttgctcccatgtgatcaaactgacgaacttgagt |
39189079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 39131097 - 39131201
Alignment:
| Q |
115 |
ctaatcatgcagttacatcatgcacaggtaatcaattaagtcccgtcattgatgaaagaagtttgatgttgctctcatgtgagcaaactgatgagcttga |
214 |
Q |
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||||| |||||||||| || | |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |
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| T |
39131097 |
ctaattatgcagttacgtcgtacacaggtaatcaattaagtcccaccattgatgaaagaagtttgatgttgctcccatgtgagctaactgatgaacttga |
39131196 |
T |
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| Q |
215 |
gttgt |
219 |
Q |
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||||| |
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| T |
39131197 |
gttgt |
39131201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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