View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2270_low_6 (Length: 481)
Name: NF2270_low_6
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2270_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 38 - 471
Target Start/End: Original strand, 45276072 - 45276505
Alignment:
| Q |
38 |
agcatgattatgttgtgcctagtttgctaagtacctggcaaatcccaaggatcaaacttgcagatattgatctcaggaataatggaagcaggcaattgat |
137 |
Q |
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| T |
45276072 |
agcatgattatgttgtgcctagtttgctaagtacctggcaaatcccaaggatcaaacttgcagacattgatctcaggaataatggaagcaggcaattgat |
45276171 |
T |
|
| Q |
138 |
aagagaagatcttacatttcaagtaatgaaagacaagctcttcgtccgttggctgaaaacaaaaaccaggaggcaatttgcttactccatttttcacaaa |
237 |
Q |
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| T |
45276172 |
aagagaagatcttacatttcaagtaatgaaagacaagctcttcgtccgttggctgaaaacaaaaaccaggaggcaatttgcttactccatttttcacaaa |
45276271 |
T |
|
| Q |
238 |
attcagcttttccatttgcttaaaactttctcttcaaactcttgattttgatcggtttgagtatgaggctgaagataggcacattaacgaatatgtatat |
337 |
Q |
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| T |
45276272 |
attcagcttttccatttgcttaaaactttctcctcaaactcttgattttgatcggtttgagtatgaggctgaagataggcactttaacgaatatgtatat |
45276371 |
T |
|
| Q |
338 |
acttgcatgggtgtatttatatataacaggttgagaatgagaaacatataaaggagacaatgcttactggtctaaatttttatgattaacaaattaatat |
437 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45276372 |
acttgcatgagtgtatttatatataacaggttgagaatgagaaacatataaaggagacaatgcttactggtctaaaattttatgattaacaaattaatat |
45276471 |
T |
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| Q |
438 |
taaagaatatccacgcaattttaagatacctttg |
471 |
Q |
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| T |
45276472 |
taaagaatatccacgcaattttaagatacctttg |
45276505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 70 - 261
Target Start/End: Original strand, 40364290 - 40364481
Alignment:
| Q |
70 |
acctggcaaatcccaaggatcaaacttgcagatattgatctcaggaataatggaagcaggcaattgataagagaagatcttacatttcaagtaatgaaag |
169 |
Q |
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|||||||||||||||||||||| ||||||| | ||||| ||||||||| |||||||||||||| | | |||||||| ||||||||||| |||| ||| |
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| T |
40364290 |
acctggcaaatcccaaggatcatacttgcaaacattgacctcaggaatgatggaagcaggcaaggggcatgagaagattttacatttcaaataattaaac |
40364389 |
T |
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| Q |
170 |
acaagctcttcgtccgttggctgaaaacaaaaaccaggaggcaatttgcttactccatttttcacaaaattcagcttttccatttgcttaaa |
261 |
Q |
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| T |
40364390 |
acaagctcttcatctgttggttggaaacgaaaaccaggaggcaatctactcactccatttttaataaaattcagcttatccatttgtttaaa |
40364481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 48189 - 48052
Alignment:
| Q |
77 |
aaatcccaaggatcaaacttgcagatattgatctcaggaataatggaagcaggcaattgataagagaagatcttacatttcaagtaatgaaagacaagct |
176 |
Q |
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||||||||||||||| ||||||| | || | |||||||| ||||||||||| || | ||||||||| ||||| |||||||| |||| ||||| | |
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| T |
48189 |
aaatcccaaggatcagacttgcaaagatcaacttcaggaatgatggaagcaggtaaagggaaagagaagaccttacgcttcaagtattgaacaacaagtt |
48090 |
T |
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| Q |
177 |
cttcgtccgttggctgaaaacaaaaaccaggaggcaat |
214 |
Q |
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|||| || ||||| ||||||| ||||| || |||||| |
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| T |
48089 |
cttcatcagttggatgaaaacggaaacctggtggcaat |
48052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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