View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2270_low_7 (Length: 470)

Name: NF2270_low_7
Description: NF2270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2270_low_7
NF2270_low_7
[»] chr8 (10 HSPs)
chr8 (22-217)||(3423913-3424115)
chr8 (246-456)||(3423669-3423881)
chr8 (259-404)||(34653276-34653420)
chr8 (290-380)||(13636244-13636334)
chr8 (290-380)||(13736657-13736747)
chr8 (265-371)||(24334458-24334564)
chr8 (246-340)||(22488845-22488939)
chr8 (268-381)||(41086819-41086932)
chr8 (299-370)||(3670555-3670626)
chr8 (281-370)||(44167176-44167265)
[»] chr2 (12 HSPs)
chr2 (246-382)||(16209793-16209929)
chr2 (279-381)||(4818743-4818843)
chr2 (287-392)||(29140163-29140269)
chr2 (300-382)||(38373365-38373447)
chr2 (310-371)||(19028478-19028539)
chr2 (281-382)||(30554532-30554638)
chr2 (268-358)||(14818824-14818914)
chr2 (293-366)||(4604675-4604747)
chr2 (246-342)||(8793850-8793946)
chr2 (325-388)||(18967757-18967820)
chr2 (265-381)||(34466981-34467096)
chr2 (310-382)||(35005222-35005294)
[»] chr7 (9 HSPs)
chr7 (257-382)||(45411265-45411390)
chr7 (270-370)||(46288819-46288919)
chr7 (284-374)||(40024192-40024282)
chr7 (326-387)||(21946151-21946212)
chr7 (251-371)||(2256404-2256523)
chr7 (246-380)||(23070195-23070329)
chr7 (268-339)||(23705039-23705110)
chr7 (303-374)||(31245262-31245333)
chr7 (304-369)||(12139824-12139887)
[»] chr1 (10 HSPs)
chr1 (266-399)||(30264067-30264205)
chr1 (266-374)||(30350735-30350843)
chr1 (246-365)||(9552818-9552937)
chr1 (256-380)||(46536653-46536777)
chr1 (309-380)||(26768708-26768778)
chr1 (282-379)||(12188639-12188736)
chr1 (287-342)||(50014189-50014244)
chr1 (304-382)||(8772434-8772512)
chr1 (309-341)||(52426245-52426277)
chr1 (320-381)||(16632750-16632811)
[»] chr5 (9 HSPs)
chr5 (251-392)||(30251934-30252075)
chr5 (257-373)||(1637963-1638079)
chr5 (282-374)||(26402019-26402111)
chr5 (304-380)||(10418601-10418677)
chr5 (246-298)||(20429799-20429851)
chr5 (319-382)||(25731219-25731282)
chr5 (266-382)||(12487100-12487217)
chr5 (246-334)||(34596489-34596578)
chr5 (281-382)||(42641116-42641217)
[»] chr3 (11 HSPs)
chr3 (247-380)||(35744679-35744814)
chr3 (286-407)||(20137590-20137709)
chr3 (253-351)||(40394905-40395003)
chr3 (282-380)||(47510750-47510848)
chr3 (281-369)||(29398268-29398356)
chr3 (286-407)||(23278016-23278135)
chr3 (313-385)||(41632026-41632098)
chr3 (266-341)||(11529304-11529379)
chr3 (300-342)||(42426246-42426288)
chr3 (246-382)||(4195306-4195442)
chr3 (296-380)||(44765299-44765383)
[»] chr4 (11 HSPs)
chr4 (246-382)||(16502389-16502524)
chr4 (282-382)||(14124203-14124303)
chr4 (290-374)||(51088916-51089000)
chr4 (282-342)||(2392597-2392657)
chr4 (246-298)||(5324605-5324657)
chr4 (287-407)||(34341398-34341518)
chr4 (310-341)||(32906156-32906187)
chr4 (251-385)||(41259984-41260118)
chr4 (268-344)||(53650078-53650155)
chr4 (268-380)||(33027147-33027258)
chr4 (313-349)||(42009690-42009726)
[»] chr6 (3 HSPs)
chr6 (254-373)||(2223669-2223788)
chr6 (282-392)||(23131454-23131564)
chr6 (300-382)||(29694306-29694388)
[»] scaffold0007 (1 HSPs)
scaffold0007 (304-381)||(246547-246624)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 3e-83; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 3424115 - 3423913
Alignment:
Q  22 gagctattccaaactagtgctcaaagttagaac-------atacgtactttatttccacaaaatattgtcctcctaacagttatatagcactatacattg 114  Q
    |||||||||||||||||||||||||||||||||       |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3424115 gagctattccaaactagtgctcaaagttagaacttagaacatacgtccttcatttccacaaaatattgtcctcctaacagttatatagcactatacattg 3424016  T
Q  115 tctagataagcaatcatgtggctaacaatagcaagacatagaacttgttgattgggagaaaacaagcattatttgtgaaattatgggtcttaattatacc 214  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  3424015 tctagttaagcaatcatgtggctaacaatagcaagacatagaacttgttgaatgggagaaaacaagcattatttgtgaaattgtgggtcttaattatacc 3423916  T
Q  215 gca 217  Q
    |||    
T  3423915 gca 3423913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 246 - 456
Target Start/End: Complemental strand, 3423881 - 3423669
Alignment:
Q  246 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 345  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  3423881 ctaatcagtgccttaagggtaatggttaagaaattcattagtagaaattatgttttagaaatgcaagtttttatttttgtcttagcaataattacacaag 3423782  T
Q  346 ttttagttacaaagttacttattttagtattttaaccgatacctcaacgacactagttagca--nnnnnnnnnngaacaaaatttgagatattatcccga 443  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||    
T  3423781 ttttagttacaaaattacttattttagtactttaaccgatacctcaacgacactagttagcatttttttttttggaacaaaatttgagatattatcccga 3423682  T
Q  444 tttacttgatatt 456  Q
    ||||| |||||||    
T  3423681 tttacgtgatatt 3423669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 404
Target Start/End: Original strand, 34653276 - 34653420
Alignment:
Q  259 taagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaa 358  Q
    |||||| |||||||||  ||| |||||||||||||||||| ||| ||| ||||||||||| ||||||||| ||||||||||||||| |||| ||   ||     
T  34653276 taagggcaatggttaaggaatctattagtagaaattatgtcttgaaaacgcaagtttttacttttgtctt-gcaataattacacaactttttgtagtaat 34653374  T
Q  359 gttacttattttagtattttaaccgatacctcaacgacactagtta 404  Q
    |||||||||||||||| ||||| | || |||||| | |||||||||    
T  34653375 gttacttattttagtactttaatcaatgcctcaagggcactagtta 34653420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 290 - 380
Target Start/End: Complemental strand, 13636334 - 13636244
Alignment:
Q  290 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 380  Q
    ||||| ||| ||||||||||| ||||||| |||||||||| |||||| ||||||| |||| ||||||||||||||||||||| || |||||    
T  13636334 aaattttgtcttggaaatgcatgtttttacttttgtcttaacaataactacacaactttttgttacaaagttacttattttaatactttaa 13636244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 290 - 380
Target Start/End: Complemental strand, 13736747 - 13736657
Alignment:
Q  290 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 380  Q
    ||||| ||| ||||||||||| ||||||| |||||||||| |||||| ||||||| |||| ||||||||||||||||||||| || |||||    
T  13736747 aaattttgtcttggaaatgcatgtttttacttttgtcttaacaataactacacaactttttgttacaaagttacttattttaatactttaa 13736657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 265 - 371
Target Start/End: Complemental strand, 24334564 - 24334458
Alignment:
Q  265 taatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttact 364  Q
    ||||||||||  |||| ||||||||||||| ||||||  |||| |||||||||| |||| |||| | ||||||||||||| ||||  || |||| || ||    
T  24334564 taatggttaaggaattcattagtagaaattttgttttaaaaatacaagtttttacttttctcttggtaataattacacaactttttattgcaaaattgct 24334465  T
Q  365 tatttta 371  Q
    |||||||    
T  24334464 tatttta 24334458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 340
Target Start/End: Complemental strand, 22488939 - 22488845
Alignment:
Q  246 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattac 340  Q
    |||| ||||||| ||||||||||||||||  | |  |||| |||||| | |||||||||||| |||||||| | |||| ||||||||||| ||||    
T  22488939 ctaaccagtgccctaagggtaatggttaaggattccattaatagaaactttgttttggaaatacaagttttcacttttttcttagcaatagttac 22488845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 381
Target Start/End: Original strand, 41086819 - 41086932
Alignment:
Q  268 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttactta 366  Q
    |||||||| ||| |||| ||||||| | ||| |||||||| ||| |||||| |||| |||| | ||||||||||||| |||||| ||| ||| |||||||    
T  41086819 tggttaaagaatctatttgtagaaactttgtcttggaaatacaaatttttacttttatcttggtaataattacacaacatttta-ttaaaaaattactta 41086917  T
Q  367 ttttagtattttaac 381  Q
    |||| ||| ||||||    
T  41086918 ttttggtactttaac 41086932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 3670626 - 3670555
Alignment:
Q  299 tttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttt 370  Q
    ||||||||| |||||||||| |||||| ||| |||||||||||||| ||||   || ||| |||||||||||    
T  3670626 tttggaaatacaagtttttaattttgttttaacaataattacacaactttttaataaaaacttacttatttt 3670555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 370
Target Start/End: Original strand, 44167176 - 44167265
Alignment:
Q  281 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttt 370  Q
    ||||| |||||| | ||| |||||||| ||| | |||| |||| |||||||||| ||||||||| |||| | | |||| |||||||||||    
T  44167176 tattaatagaaactttgtcttggaaatacaaatctttacttttttcttagcaatgattacacaacttttcgatgcaaacttacttatttt 44167265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 246 - 382
Target Start/End: Original strand, 16209793 - 16209929
Alignment:
Q  246 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 345  Q
    |||||||||| |||||||| ||||||||| ||||  | ||||||||| | |||||||||||| ||||| |||| |||||||||||||||| ||||||||     
T  16209793 ctaatcagtgtcttaagggcaatggttaagaaatccaatagtagaaactttgttttggaaatacaagtgtttacttttgtcttagcaatagttacacaac 16209892  T
Q  346 ttttagttacaaagttacttattttagtattttaacc 382  Q
    |||| |||  ||||||||||||||||||| |||||||    
T  16209893 tttttgttttaaagttacttattttagtactttaacc 16209929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 381
Target Start/End: Original strand, 4818743 - 4818843
Alignment:
Q  279 tttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtatttt 378  Q
    |||||||||||||||| || || |||||| |||||||||| |||| |||||  ||||||||||||| ||||| || |||||||||||||||||||| |||    
T  4818743 tttattagtagaaattttgctt-ggaaattcaagtttttacttttatcttaataataattacacaattttta-tttcaaagttacttattttagtacttt 4818840  T
Q  379 aac 381  Q
    |||    
T  4818841 aac 4818843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 392
Target Start/End: Complemental strand, 29140269 - 29140163
Alignment:
Q  287 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttacttattttagtattttaaccgat 385  Q
    |||||||| |||  || |||| |||||||||||||||  |||||||||||||||||||  |||| ||| |||| ||||||||||||||| ||||||| ||    
T  29140269 tagaaattttgtcctgaaaatacaagtttttattttttccttagcaataattacacaatttttttgtttcaaaattacttattttagtactttaaccaat 29140170  T
Q  386 acctcaa 392  Q
    | |||||    
T  29140169 atctcaa 29140163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 382
Target Start/End: Original strand, 38373365 - 38373447
Alignment:
Q  300 ttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 382  Q
    |||||||| |||||||||| |||| |||||||||||||||||| | |||| | | |||| |||||||||||| ||||||||||    
T  38373365 ttggaaatacaagtttttacttttatcttagcaataattacaccatttttcgatgcaaatttacttattttaatattttaacc 38373447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 19028478 - 19028539
Alignment:
Q  310 aagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttta 371  Q
    ||||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||||||||||    
T  19028478 aagtttttacttttgtcttagtaataattacacaactttttgttgcaaagttacttatttta 19028539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 281 - 382
Target Start/End: Complemental strand, 30554638 - 30554532
Alignment:
Q  281 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttac-----aaagttacttattttagtat 375  Q
    |||||||||||||||||| ||| |||||||  |||||| |||||||||| || ||||||||||| |||| ||| |     ||||| |||||||||| |||    
T  30554638 tattagtagaaattatgtcttgaaaatgcacatttttacttttgtcttaacattaattacacaattttttgttgcaaattaaagtaacttattttaatat 30554539  T
Q  376 tttaacc 382  Q
    |||||||    
T  30554538 tttaacc 30554532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 358
Target Start/End: Complemental strand, 14818914 - 14818824
Alignment:
Q  268 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaa 358  Q
    |||||||| ||| |||||| ||||| |  |||||| |||||||| |||||| |||||| ||||||||||||| |||| |||| | ||||||    
T  14818914 tggttaaagaatctattagaagaaacttggttttgaaaatgcaaatttttacttttgttttagcaataattatacaattttttgatacaaa 14818824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 366
Target Start/End: Complemental strand, 4604747 - 4604675
Alignment:
Q  293 ttatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttactta 366  Q
    |||||| ||||||||||||||||| |||| |||||||||| ||||||||||| |||| ||| |  |||||||||    
T  4604747 ttatgtcttggaaatgcaagtttt-atttctgtcttagcagtaattacacaactttttgttgcttagttactta 4604675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 342
Target Start/End: Complemental strand, 8793946 - 8793850
Alignment:
Q  246 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacac 342  Q
    |||| ||||||| |||||| | |||||||  ||| || || |||||| | ||| ||||||||  ||||||||||||||||||| |||||||| ||||    
T  8793946 ctaaccagtgccctaagggcattggttaaggaatctactaatagaaactttgtcttggaaatataagtttttatttttgtcttggcaataatcacac 8793850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 388
Target Start/End: Original strand, 18967757 - 18967820
Alignment:
Q  325 tcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgatacc 388  Q
    ||||| |||||||||||||| |||| ||| |||| |||| ||||||| |||||||||| |||||    
T  18967757 tcttaacaataattacacaacttttcgttgcaaacttacgtattttaatattttaaccaatacc 18967820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 381
Target Start/End: Original strand, 34466981 - 34467096
Alignment:
Q  265 taatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttact 364  Q
    |||| ||||| ||||| ||||||| ||| | ||||||| ||||| || |||||| |||  | |||||||||||||||||| |||   ||| ||| |||||    
T  34466981 taatagttaagaaattcattagtaaaaaatttgttttgaaaatgtaaatttttagttta-tgttagcaataattacacaactttatattataaatttact 34467079  T
Q  365 tattttagtattttaac 381  Q
    ||||||| || ||||||    
T  34467080 tattttaatactttaac 34467096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 35005294 - 35005222
Alignment:
Q  310 aagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 382  Q
    |||| |||| |||| |||||||||| ||||||| | |||| | | |||| ||||||||||||||| |||||||    
T  35005294 aagtctttacttttttcttagcaatgattacaccacttttcgatgcaaacttacttattttagtactttaacc 35005222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 257 - 382
Target Start/End: Complemental strand, 45411390 - 45411265
Alignment:
Q  257 cttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttaca 356  Q
    |||||| | |||||||||| |||| |||  ||||||||||||||| |||||||||||||||| |||| ||| | ||||||||||| || |||| |||| |    
T  45411390 cttaagagcaatggttaaagaattcatttatagaaattatgttttagaaatgcaagtttttacttttatctcaacaataattacataactttttgttata 45411291  T
Q  357 aagttacttattttagtattttaacc 382  Q
    |||||||||||||||||| |||||||    
T  45411290 aagttacttattttagtactttaacc 45411265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 370
Target Start/End: Original strand, 46288819 - 46288919
Alignment:
Q  270 gttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 369  Q
    ||||||||||||||||||||||||| ||| ||  |||||||||||||| ||||||||||||||||||||||| || ||||  || |||| || |||||||    
T  46288819 gttaaaaaatttattagtagaaattttgtcttaaaaatgcaagtttttgtttttgtcttagcaataattacataattttttattgcaaaattgcttattt 46288918  T
Q  370 t 370  Q
    |    
T  46288919 t 46288919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 284 - 374
Target Start/End: Original strand, 40024192 - 40024282
Alignment:
Q  284 tagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 374  Q
    ||||| ||||||||||||| ||||||||||||||| |||| | |||||||||||||||||| ||||  || ||||||||||||| ||||||    
T  40024192 tagtataaattatgttttgcaaatgcaagtttttacttttattttagcaataattacacaactttttattgcaaagttacttatgttagta 40024282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 21946212 - 21946151
Alignment:
Q  326 cttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgatac 387  Q
    ||||| ||||||||||||| ||||  || |||||||||||||||||||||||||||| ||||    
T  21946212 cttagtaataattacacaactttttattgcaaagttacttattttagtattttaaccaatac 21946151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 371
Target Start/End: Original strand, 2256404 - 2256523
Alignment:
Q  251 cagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaatttta 350  Q
    ||||||||||||||||||| ||||  | |  |||| |||||| ||||| || ||||||||||| ||||||||| |||||| ||| ||||||| | ||||     
T  2256404 cagtgccttaagggtaatgattaaggattccattaatagaaactatgtcttagaaatgcaagtatttattttt-tcttaggaatgattacaccacttttc 2256502  T
Q  351 gttacaaagttacttatttta 371  Q
    | | |||| ||||||||||||    
T  2256503 gatgcaaacttacttatttta 2256523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 380
Target Start/End: Original strand, 23070195 - 23070329
Alignment:
Q  246 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 345  Q
    |||| ||||||| |||||  ||||||||| || |  |||| |||||| | ||| |||||||| ||||| |||| |||| |||||||||| ||||||| |     
T  23070195 ctaaccagtgccctaaggacaatggttaagaattccattaatagaaactttgtcttggaaatacaagtctttacttttttcttagcaatgattacaccac 23070294  T
Q  346 ttttagttacaaagttacttattttagtattttaa 380  Q
    |||| | | |||| |||||||||||| || |||||    
T  23070295 ttttcgatgcaaatttacttattttaatactttaa 23070329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 23705110 - 23705039
Alignment:
Q  268 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataatta 339  Q
    |||||||| ||| ||||||| |||||| ||| ||||||||||| ||||||| ||||  |||| |||||||||    
T  23705110 tggttaaagaatctattagttgaaattttgtcttggaaatgcatgtttttactttttccttaacaataatta 23705039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 374
Target Start/End: Original strand, 31245262 - 31245333
Alignment:
Q  303 gaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 374  Q
    ||||| ||||| || | ||||||||||||||||||||||| | |||| | | |||| |||||||||||||||    
T  31245262 gaaatacaagtcttcacttttgtcttagcaataattacaccatttttcgatgcaaacttacttattttagta 31245333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 12139824 - 12139887
Alignment:
Q  304 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 369  Q
    |||| |||||||||||||  |||| |||||||||||||||| ||||  || |||||||||||||||    
T  12139824 aaatacaagtttttattt--gtctcagcaataattacacaactttttatttcaaagttacttattt 12139887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 399
Target Start/End: Original strand, 30264067 - 30264205
Alignment:
Q  266 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaa-----taattacacaaattttagttacaaagt 360  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||| |||     ||||||||||| |||| |||  |||||    
T  30264067 aatggttaagaaatttattagtagaaattttgttttgaaaatgtaagtttttacttttgtcttatcaataatttaattacacaattttttgttgtaaagt 30264166  T
Q  361 tacttattttagtattttaaccgatacctcaacgacact 399  Q
    ||||||||||| || ||||||  ||| ||||| ||||||    
T  30264167 tacttattttaataatttaacaaatatctcaatgacact 30264205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 266 - 374
Target Start/End: Complemental strand, 30350843 - 30350735
Alignment:
Q  266 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttactt 365  Q
    |||||||||  ||| ||||||||| |||||||| ||||||||||||| ||||  |||| |||||||||| ||||||||| | ||  || |||||||||||    
T  30350843 aatggttaaggaatctattagtaggaattatgtcttggaaatgcaagcttttgcttttatcttagcaatgattacacaattgtttattgcaaagttactt 30350744  T
Q  366 attttagta 374  Q
    |||||||||    
T  30350743 attttagta 30350735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 365
Target Start/End: Complemental strand, 9552937 - 9552818
Alignment:
Q  246 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 345  Q
    |||| ||||| |||||||| |||| ||||| ||| ||||| || |||||   |||||||||||||||| |||| |||||||||| |||||||||||||      
T  9552937 ctaaccagtgtcttaagggcaatgattaaagaatctattaataaaaatttcattttggaaatgcaagtatttacttttgtcttatcaataattacacacc 9552838  T
Q  346 ttttagttacaaagttactt 365  Q
    |||| |||  ||||||||||    
T  9552837 tttttgttgtaaagttactt 9552818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 256 - 380
Target Start/End: Complemental strand, 46536777 - 46536653
Alignment:
Q  256 ccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttac 355  Q
    ||||||||  ||| ||||||||||| || |||| ||||| | ||||| |||| |||||||||| |||||||||| |||||| ||||||| |||   || |    
T  46536777 ccttaaggacaattgttaaaaaattcatcagtacaaattctattttgaaaatacaagtttttacttttgtcttatcaataactacacaactttgtattgc 46536678  T
Q  356 aaagttacttattttagtattttaa 380  Q
    ||| |||||||||||| || |||||    
T  46536677 aaaattacttattttaatactttaa 46536653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 26768778 - 26768708
Alignment:
Q  309 caagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 380  Q
    ||||||||||||||||||||| | ||||| ||||||||||| | |||||| ||||||||||||||| |||||    
T  26768778 caagtttttatttttgtcttatctataatcacacaaatttt-gatacaaatttacttattttagtaatttaa 26768708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 379
Target Start/End: Complemental strand, 12188736 - 12188639
Alignment:
Q  282 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtatttta 379  Q
    |||| |||||| | ||| |||||||| ||| |||||| |||| |||||||||||||||||| | ||||   |||||| ||||||||||||||| ||||    
T  12188736 attaatagaaactttgtcttggaaatacaaatttttacttttttcttagcaataattacaccatttttcaatacaaaattacttattttagtacttta 12188639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 50014189 - 50014244
Alignment:
Q  287 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacac 342  Q
    |||||| | |||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  50014189 tagaaactttgtttttgaaatacaaatttttatttttgtcttagcaataattacac 50014244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 382
Target Start/End: Original strand, 8772434 - 8772512
Alignment:
Q  304 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 382  Q
    |||| ||||| |||| ||||||||| ||||||||||||| | |||| | | |||| ||||||||||||||| |||||||    
T  8772434 aaatacaagtctttacttttgtcttggcaataattacaccacttttcgatgcaaatttacttattttagtactttaacc 8772512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 52426277 - 52426245
Alignment:
Q  309 caagtttttatttttgtcttagcaataattaca 341  Q
    |||||||||||||||||||||||||||||||||    
T  52426277 caagtttttatttttgtcttagcaataattaca 52426245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 16632750 - 16632811
Alignment:
Q  320 ttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 381  Q
    ||||||||| | ||||||||||||| ||||  |||||||||| ||||||||| || ||||||    
T  16632750 ttttgtcttggtaataattacacaattttttattacaaagttgcttattttaatactttaac 16632811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 392
Target Start/End: Original strand, 30251934 - 30252075
Alignment:
Q  251 cagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaatttta 350  Q
    ||||||| |||||| |||||||||  | |  |||| |||||||| ||| |||||||| ||||| |||| |||| |||||||||||||||||| | ||||     
T  30251934 cagtgccctaagggcaatggttaaggattccattaatagaaattttgtcttggaaatacaagtctttacttttttcttagcaataattacaccacttttc 30252033  T
Q  351 gttacaaagttacttattttagtattttaaccgatacctcaa 392  Q
    | ||||||  || ||||||||||| ||||||| |||||||||    
T  30252034 gatacaaatatatttattttagtactttaaccaatacctcaa 30252075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 373
Target Start/End: Original strand, 1637963 - 1638079
Alignment:
Q  257 cttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttaca 356  Q
    |||||||| |||||||||  | | ||||| || ||||| ||| |||||||| ||| |||||| |||| |||||||||||||||||||| |||| | | ||    
T  1637963 cttaagggcaatggttaatgattctattaatataaattttgtcttggaaatacaaatttttacttttttcttagcaataattacacaactttttgatgca 1638062  T
Q  357 aagttacttattttagt 373  Q
    || ||| ||||||||||    
T  1638063 aacttatttattttagt 1638079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 282 - 374
Target Start/End: Original strand, 26402019 - 26402111
Alignment:
Q  282 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 374  Q
    ||||||||||||| ||| ||||||||||||| ||| | |||||||||| |||| ||||||||| ||||  ||  ||| |||||||||||||||    
T  26402019 attagtagaaattttgtattggaaatgcaagctttcacttttgtcttaacaatgattacacaactttttattgaaaaattacttattttagta 26402111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 10418677 - 10418601
Alignment:
Q  304 aaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttacttattttagtattttaa 380  Q
    |||| ||||||||||||||||| ||| |||||||||||||| |||||| || ||||||||||||||||| || |||||    
T  10418677 aaatacaagtttttatttttgttttaacaataattacacaacattttattt-caaagttacttattttaatactttaa 10418601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 20429851 - 20429799
Alignment:
Q  246 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgt 298  Q
    |||| ||||| | ||| ||||||||||||| ||||||||||||||||||||||    
T  20429851 ctaaccagtgtcctaaaggtaatggttaaagaatttattagtagaaattatgt 20429799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 25731282 - 25731219
Alignment:
Q  319 tttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 382  Q
    ||||| |||||||||||||||||||| ||||   | |||| ||||||||||||||| |||||||    
T  25731282 tttttttcttagcaataattacacaacttttctatgcaaacttacttattttagtactttaacc 25731219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 382
Target Start/End: Original strand, 12487100 - 12487217
Alignment:
Q  266 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtct-tagcaataattacacaaattttagttacaaagttact 364  Q
    |||||||||  ||| |||||||||||||| ||| ||| |||| ||| |||||| ||||||||   | ||||||||||||| | || |||  |||||||||    
T  12487100 aatggttaaggaatctattagtagaaattttgtcttgaaaatacaaatttttacttttgtctcgggtaataattacacaactcttcgttgtaaagttact 12487199  T
Q  365 tattttagtattttaacc 382  Q
    | ||||| || |||||||    
T  12487200 tgttttaatactttaacc 12487217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 334
Target Start/End: Original strand, 34596489 - 34596578
Alignment:
Q  246 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagt-ttttatttttgtcttagcaat 334  Q
    |||| ||||||  ||| ||||||||||| ||| |||||||||| ||||| | | |||| ||| ||||| |||||||||| ||||||||||    
T  34596489 ctaaccagtgctctaaaggtaatggttataaattttattagtaaaaattttatcttgggaatacaagtattttatttttttcttagcaat 34596578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 382
Target Start/End: Complemental strand, 42641217 - 42641116
Alignment:
Q  281 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 380  Q
    ||||| |||||| | ||| ||| |||| ||||| |||| |||| ||||| |||| ||||||| | |||| | | |||| ||||||||||||||| |||||    
T  42641217 tattaatagaaactttgtcttgaaaatacaagtctttacttttttcttatcaatgattacaccatttttcgatgcaaacttacttattttagtactttaa 42641118  T
Q  381 cc 382  Q
    ||    
T  42641117 cc 42641116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 380
Target Start/End: Original strand, 35744679 - 35744814
Alignment:
Q  247 taatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaat 346  Q
    ||||||||||  || | ||| ||||||| ||||  |||||||||||| |||| |||||| |||||||||||| |||||||||| ||||||||||||| ||    
T  35744679 taatcagtgcactatgagtattggttaagaaatccattagtagaaatcatgtattggaa-tgcaagtttttacttttgtcttaccaataattacacatat 35744777  T
Q  347 t---ttagttacaaagttacttattttagtattttaa 380  Q
    |   || |||||||| |||||||||||| || |||||    
T  35744778 ttaatttgttacaaaattacttattttaatactttaa 35744814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 286 - 407
Target Start/End: Original strand, 20137590 - 20137709
Alignment:
Q  286 gtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 385  Q
    ||||||||| ||| ||||||||| || |||||| |||||||||  ||||||||||   |||||| ||| |||||||||||||||||||| | ||||| ||    
T  20137590 gtagaaattttgtcttggaaatgaaattttttacttttgtcttgacaataattacc--aatttttgttgcaaagttacttattttagtactctaaccaat 20137687  T
Q  386 acctcaacgacactagttagca 407  Q
      | ||| | ||||||||||||    
T  20137688 gtcccaagggcactagttagca 20137709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 253 - 351
Target Start/End: Complemental strand, 40395003 - 40394905
Alignment:
Q  253 gtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttag 351  Q
    ||||| ||||| ||||| ||||  |||||||||||||||||| | | ||  ||||| |||||||||||||| | |||| ||||||||||||| ||||||    
T  40395003 gtgccataaggataatgattaaggaatttattagtagaaattttatcttaaaaatgtaagtttttatttttattttagtaataattacacaacttttag 40394905  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 282 - 380
Target Start/End: Complemental strand, 47510848 - 47510750
Alignment:
Q  282 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 380  Q
    |||| |||||| ||||| |||||||| ||| | ||| ||||| ||||| |||||||||||| | |||| | |||||| ||||||||||||||| |||||    
T  47510848 attaatagaaactatgtcttggaaatacaaatctttgtttttttcttaacaataattacaccatttttcgatacaaacttacttattttagtactttaa 47510750  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 369
Target Start/End: Original strand, 29398268 - 29398356
Alignment:
Q  281 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 369  Q
    |||||||||||||| | |||||||||||||| ||||||| | | |  |||||||| |||||||| |||| |||  ||||||||||||||    
T  29398268 tattagtagaaattttattttggaaatgcaaatttttatctctctaatagcaatagttacacaactttttgttgtaaagttacttattt 29398356  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 407
Target Start/End: Complemental strand, 23278135 - 23278016
Alignment:
Q  286 gtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 385  Q
    ||||||||| ||| ||||||||| || |||||| |||||||||  ||||||||||   |||||| ||| |||||||  ||||||||||| | ||||| ||    
T  23278135 gtagaaattctgtcttggaaatgaaattttttacttttgtcttgacaataattacc--aatttttgttgcaaagttgtttattttagtactctaaccaat 23278038  T
Q  386 acctcaacgacactagttagca 407  Q
      ||||| | ||||||||||||    
T  23278037 gtctcaagggcactagttagca 23278016  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 41632026 - 41632098
Alignment:
Q  313 tttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 385  Q
    |||||||||||||||||| ||||||||||| | ||||  || |||| || |||||||||| ||||||| ||||    
T  41632026 tttttatttttgtcttagtaataattacactattttttattgcaaacttgcttattttagaattttaatcgat 41632098  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 11529304 - 11529379
Alignment:
Q  266 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattaca 341  Q
    |||||||||| |||  |||||||||| || ||| ||||| ||||||||||||| |||| |||| | ||||||||||    
T  11529304 aatggttaaagaatccattagtagaagttttgtcttggagatgcaagtttttacttttatcttggtaataattaca 11529379  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 42426288 - 42426246
Alignment:
Q  300 ttggaaatgcaagtttttatttttgtcttagcaataattacac 342  Q
    ||||||||  |||||||||||||||||||| ||||||||||||    
T  42426288 ttggaaatataagtttttatttttgtcttaacaataattacac 42426246  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 382
Target Start/End: Original strand, 4195306 - 4195442
Alignment:
Q  246 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagttttta-tttttgtcttagcaataattacacaa 344  Q
    |||| |||||||||||||| |||||||||  | |  |||| ||| |||| |||||||||||| ||| | |||| ||||  ||||||||| |||||||| |    
T  4195306 ctaaccagtgccttaagggcaatggttaaggattccattaatagtaattttgttttggaaatacaattctttacttttcttcttagcaa-aattacacca 4195404  T
Q  345 attttagttacaaagttacttattttagtattttaacc 382  Q
     ||||   | |||| ||||||||||||||| |||||||    
T  4195405 tttttttatgcaaacttacttattttagtactttaacc 4195442  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 380
Target Start/End: Original strand, 44765299 - 44765383
Alignment:
Q  296 tgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 380  Q
    |||||||||||| ||||| |||| || | |||||||||||||||||| | ||||   | |||| |||||||||||| || |||||    
T  44765299 tgttttggaaatacaagtctttacttatttcttagcaataattacaccacttttcaatgcaaacttacttattttaatactttaa 44765383  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 382
Target Start/End: Original strand, 16502389 - 16502524
Alignment:
Q  246 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 345  Q
    |||| ||||||| |||||| |||||||||  |||  ||||||||||| | ||| |||||||| ||| |||||| |||| |||| |||||| ||||||||     
T  16502389 ctaaccagtgccctaagggcaatggttaaggaatccattagtagaaactttgtcttggaaatacaaattttta-ttttctcttggcaatatttacacaac 16502487  T
Q  346 ttttagttacaaagttacttattttagtattttaacc 382  Q
    |||| |||  | ||||||||||||||||| |||||||    
T  16502488 tttttgttttagagttacttattttagtactttaacc 16502524  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 382
Target Start/End: Complemental strand, 14124303 - 14124203
Alignment:
Q  282 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 381  Q
    |||| |||||| | ||||||||||||  ||||||||| |||| ||||||||| |||||||| | |||| | | |||| |||||||||||| || ||||||    
T  14124303 attaatagaaactttgttttggaaatataagtttttacttttttcttagcaaaaattacaccatttttcgatgcaaatttacttattttaatactttaac 14124204  T
Q  382 c 382  Q
    |    
T  14124203 c 14124203  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 51089000 - 51088916
Alignment:
Q  290 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 374  Q
    ||||||| | ||| ||||| || |||||| |||| |||||  ||||||||||||| ||||  |||||||||||||||||||||||    
T  51089000 aaattatatgttgaaaatgtaaatttttacttttatcttacaaataattacacaattttttattacaaagttacttattttagta 51088916  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 2392597 - 2392657
Alignment:
Q  282 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacac 342  Q
    ||||||||||| | ||| ||| ||||||||||||||| ||||||||| ||||||| |||||    
T  2392597 attagtagaaactttgtcttgtaaatgcaagtttttacttttgtcttggcaataactacac 2392657  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 5324657 - 5324605
Alignment:
Q  246 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgt 298  Q
    |||| ||||| | ||| ||||||||||||| ||||||||||||||||||||||    
T  5324657 ctaaccagtgtcctaaaggtaatggttaaagaatttattagtagaaattatgt 5324605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 407
Target Start/End: Complemental strand, 34341518 - 34341398
Alignment:
Q  287 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgata 386  Q
    |||||||| |||| |  |||| |||| ||||| ||||||||||||||||||||||||| ||||   |||||| |||| ||||| || | ||||||| ||     
T  34341518 tagaaattttgttgtaaaaatacaagattttacttttgtcttagcaataattacacaactttttaatacaaacttacatatttgagaactttaaccaatg 34341419  T
Q  387 cctcaacgacactagttagca 407  Q
     |||||  ||||| |||||||    
T  34341418 tctcaagaacactcgttagca 34341398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 341
Target Start/End: Original strand, 32906156 - 32906187
Alignment:
Q  310 aagtttttatttttgtcttagcaataattaca 341  Q
    ||||||||||||||||||||||||||||||||    
T  32906156 aagtttttatttttgtcttagcaataattaca 32906187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 385
Target Start/End: Original strand, 41259984 - 41260118
Alignment:
Q  251 cagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaatttta 350  Q
    ||||||| |||||| |||||||||  | |  |||| |||||| | ||| ||| |||| ||||| ||||||||| | ||| |||| ||||||| | ||||     
T  41259984 cagtgccctaagggcaatggttaaggattccattaatagaaactttgtcttgaaaatacaagtctttattttttttttatcaatgattacaccacttttc 41260083  T
Q  351 gttacaaagttacttattttagtattttaaccgat 385  Q
    | | |||| |||||||||||| || ||||||||||    
T  41260084 gatgcaaacttacttattttaatactttaaccgat 41260118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 53650155 - 53650078
Alignment:
Q  268 tggttaaaaaatttattagtagaaattatgttttggaaatgcaag-tttttatttttgtcttagcaataattacacaa 344  Q
    |||||||  |||| ||||||||||||| ||||||| ||||  ||  |||||| ||||||||||||||||| |||||||    
T  53650155 tggttaaggaattcattagtagaaattttgttttgaaaatataaaatttttacttttgtcttagcaataaatacacaa 53650078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 380
Target Start/End: Original strand, 33027147 - 33027258
Alignment:
Q  268 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttat 367  Q
    ||||||| ||||| ||||||| ||||| ||||||| |||| |||  ||||||| || | |||| |||||||| ||   |||| | |||||| ||||||||    
T  33027147 tggttaagaaattcattagtaaaaattttgttttg-aaatacaaaattttattcttattttagaaataattatactgctttttgatacaaacttacttat 33027245  T
Q  368 tttagtattttaa 380  Q
    |||| ||||||||    
T  33027246 tttaatattttaa 33027258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 42009726 - 42009690
Alignment:
Q  313 tttttatttttgtcttagcaataattacacaaatttt 349  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  42009726 tttttatttttgtcttagtaataattacacaactttt 42009690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 373
Target Start/End: Complemental strand, 2223788 - 2223669
Alignment:
Q  254 tgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagtt 353  Q
    ||||||||| |||||| ||||  ||| |||||||| ||||| ||||||  |||| ||| |||||| || |||||||  |||||||||| || |||| |||    
T  2223788 tgccttaagagtaatgattaaggaatctattagtaaaaattctgttttaaaaatacaaatttttacttctgtcttaataataattacataattttttgtt 2223689  T
Q  354 acaaagttacttattttagt 373  Q
     ||| |||||||||||||||    
T  2223688 gcaatgttacttattttagt 2223669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 282 - 392
Target Start/End: Original strand, 23131454 - 23131564
Alignment:
Q  282 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 381  Q
    ||||||||||| | ||| ||| ||||  || |||||| |||||| |||||||||||||| ||| ||||  || |||| ||||||||||||||| ||||||    
T  23131454 attagtagaaactttgtcttgaaaatataaatttttacttttgttttagcaataattacgcaactttttattgcaaaattacttattttagtactttaac 23131553  T
Q  382 cgatacctcaa 392  Q
    | ||| |||||    
T  23131554 caataactcaa 23131564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 300 - 382
Target Start/End: Complemental strand, 29694388 - 29694306
Alignment:
Q  300 ttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 382  Q
    |||||||| ||||||||||||||||||||| |||||||||||  | ||||   | |||| ||||||||||||||| |||||||    
T  29694388 ttggaaatacaagtttttatttttgtcttaacaataattacatcacttttcaatgcaaacttacttattttagtactttaacc 29694306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 381
Target Start/End: Original strand, 246547 - 246624
Alignment:
Q  304 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 381  Q
    |||| |||||||||| |||| ||| |||||||||||||| | |||| | | |||| ||||||||||||||| ||||||    
T  246547 aaatacaagtttttacttttttctgagcaataattacaccacttttcgatgcaaacttacttattttagtactttaac 246624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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