View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2271_high_2 (Length: 293)

Name: NF2271_high_2
Description: NF2271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2271_high_2
NF2271_high_2
[»] chr5 (8 HSPs)
chr5 (31-254)||(9617311-9617532)
chr5 (107-221)||(17391577-17391691)
chr5 (107-215)||(17382807-17382914)
chr5 (110-226)||(1348782-1348898)
chr5 (109-204)||(19970551-19970646)
chr5 (118-204)||(20110862-20110948)
chr5 (107-197)||(17376447-17376537)
chr5 (152-226)||(20049074-20049148)
[»] chr3 (1 HSPs)
chr3 (111-190)||(32243151-32243230)
[»] chr6 (3 HSPs)
chr6 (111-201)||(16229247-16229337)
chr6 (111-189)||(16259556-16259634)
chr6 (107-192)||(31114506-31114591)
[»] scaffold0009 (2 HSPs)
scaffold0009 (143-191)||(21471-21519)
scaffold0009 (130-193)||(39743-39806)


Alignment Details
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 31 - 254
Target Start/End: Complemental strand, 9617532 - 9617311
Alignment:
Q  31 ggagatcatgactgcgttgattaatcggtagaagtcgtctgcgttctccacatcggcatcttggaagtcgagaactgagagtgagtggcataatgggacc 130  Q
    ||||||||||||||||||||||||||| |||||||| | ||  ||||| ||||||  |   ||||||||||||||| ||||||||||| |||||||||||    
T  9617532 ggagatcatgactgcgttgattaatcgatagaagtcatgtg--ttctcgacatcgttactgtggaagtcgagaacttagagtgagtgggataatgggacc 9617435  T
Q  131 caccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagttactatatcattgggtaagtcattgatcgtcgtcg 230  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||| |  || || || ||||    
T  9617434 caccttttcgagagaacgatagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagttactatattatcaggtaaattgttaattgtggtcg 9617335  T
Q  231 acaatgacagccgtggcctttttg 254  Q
    ||||||||||||||||||||||||    
T  9617334 acaatgacagccgtggcctttttg 9617311  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 17391691 - 17391577
Alignment:
Q  107 gagagtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagttactatatcat 206  Q
    ||||||||||||||||||| |||||| |||||||| |||||||| ||||| ||||||| ||||  ||| || ||||||||||||||||||| ||| ||||    
T  17391691 gagagtgagtggcataatgagacccatcttttcgaaagaacggtggttctaaaagcgtctttgcatggaagcaaagagagaatgtgagttagtatctcat 17391592  T
Q  207 tgggtaagtcattga 221  Q
      || ||||||||||    
T  17391591 cagggaagtcattga 17391577  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 17382914 - 17382807
Alignment:
Q  107 gagagtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagttactatatcat 206  Q
    ||||||||||||||||||| |||||| |||||||| |||||  | ||||| ||||||| ||||  ||| |||||||||||||||||||||| ||||||||    
T  17382914 gagagtgagtggcataatgagacccatcttttcgaaagaaca-tggttctaaaagcgtgtttgcatggaagaaaagagagaatgtgagttagtatatcat 17382816  T
Q  207 tgggtaagt 215  Q
     ||| ||||    
T  17382815 cggggaagt 17382807  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 1348782 - 1348898
Alignment:
Q  110 agtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagttactatatcattgg 209  Q
    |||| |||| ||||||||| ||| || || || |||| ||||||||||||||||| ||||| || ||||||||||| ||||||||||| ||| || |  |    
T  1348782 agtgtgtggaataatgggaaccatctcttagaaagaatggtagttctgaaagcgtctttgaatgtgagaaaagagataatgtgagttagtatctcgtctg 1348881  T
Q  210 gtaagtcattgatcgtc 226  Q
    ||||||| |||| ||||    
T  1348882 gtaagtcgttgaccgtc 1348898  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 19970551 - 19970646
Alignment:
Q  109 gagtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagttactatatc 204  Q
    |||||||| ||| |||| ||||||| | || || || ||||| ||||||||||||| | ||| ||| |||||||||||||||||||||| ||||||    
T  19970551 gagtgagtagcacaatgagacccacgtcttggaaagcacggtggttctgaaagcgtctctgattggaagaaaagagagaatgtgagttagtatatc 19970646  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 20110948 - 20110862
Alignment:
Q  118 gcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagttactatatc 204  Q
    |||||||| ||||||  | || ||||||||||| ||| ||||||||| ||||| ||| ||||||||||  |||||||||| ||||||    
T  20110948 gcataatgagacccatttctttgagagaacggtggttttgaaagcgtctttgaatggaagaaaagagacgatgtgagttagtatatc 20110862  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 17376537 - 17376447
Alignment:
Q  107 gagagtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 197  Q
    ||||||||||||||||||| || ||| |||||||| ||||| |||  ||| ||||||| |||   ||| || ||||||||||| |||||||    
T  17376537 gagagtgagtggcataatgagatccatcttttcgaaagaactgtaaatctaaaagcgtctttacatggaagtaaagagagaatatgagtta 17376447  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 20049148 - 20049074
Alignment:
Q  152 gttctgaaagcgtatttgagtgggagaaaagagagaatgtgagttactatatcattgggtaagtcattgatcgtc 226  Q
    ||||||||| |||||||||  ||||||||||||||||||||| ||| ||| || | | | |||||||| ||||||    
T  20049148 gttctgaaaacgtatttgatagggagaaaagagagaatgtgaattagtatttcgtcgaggaagtcattaatcgtc 20049074  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 32243151 - 32243230
Alignment:
Q  111 gtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatg 190  Q
    ||||||||| ||||||||||||||| ||||| |||| ||||||||||||||||| ||||| ||| |||||| ||||||||    
T  32243151 gtgagtggcgtaatgggacccacctcttcgaaagaatggtagttctgaaagcgtctttgactggaagaaaaaagagaatg 32243230  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 111 - 201
Target Start/End: Original strand, 16229247 - 16229337
Alignment:
Q  111 gtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagttactat 201  Q
    ||||||| ||||||| ||||||||| ||||| |||| ||||||||||||||| | ||||| ||| |||||||||||||| ||| |||||||    
T  16229247 gtgagtgacataatgagacccacctcttcgaaagaatggtagttctgaaagcctctttgattggaagaaaagagagaatttgacttactat 16229337  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 16259556 - 16259634
Alignment:
Q  111 gtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaat 189  Q
    ||||||| ||||||| ||||||||| ||||| |||| ||||||||||||||||| ||||| ||| ||||||||||||||    
T  16259556 gtgagtgacataatgagacccacctcttcgaaagaatggtagttctgaaagcgtctttgattggaagaaaagagagaat 16259634  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 31114591 - 31114506
Alignment:
Q  107 gagagtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtg 192  Q
    |||||||||||||||||||||||||| || || || || ||  | ||||| ||||| ||||||| |||||||||||| ||||||||    
T  31114591 gagagtgagtggcataatgggacccaactcttagaaaggacattggttctaaaagcttatttgattgggagaaaagacagaatgtg 31114506  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 21519 - 21471
Alignment:
Q  143 agaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgt 191  Q
    |||||||||||||||||||| |||||||  || ||||||||||||||||    
T  21519 agaacggtagttctgaaagcatatttgatcggaagaaaagagagaatgt 21471  T

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Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 39806 - 39743
Alignment:
Q  130 ccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtga 193  Q
    |||||| || || |||| |||||||||||||||||||||||  || ||||||||||| ||||||    
T  39806 ccacctcttggaaagaatggtagttctgaaagcgtatttgatcggaagaaaagagagtatgtga 39743  T

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