View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2271_high_3 (Length: 284)
Name: NF2271_high_3
Description: NF2271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2271_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 41707748 - 41707485
Alignment:
| Q |
18 |
acctcacatttccatgctttccctcatttaaaatttaaatct--gtgttaaacttcctattccttcctcatacttcatttttcttctgttcttcgcattt |
115 |
Q |
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| T |
41707748 |
acctcacatttccatgctttccctcatttaaaatttaaatctttgtgttaaacttcctattccttcctcatacttcatttttcttctgttcttcgcattt |
41707649 |
T |
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| Q |
116 |
tggtctccttcgcgtcct-ccttccaacattcattgtaattccatcatcatccctctcatttatttgtctctttattccttcctttaatttatggtgtaa |
214 |
Q |
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| T |
41707648 |
tggtctcctccccgtccttccttccaacattcattgtaattccatcatcatccctctcatttatttgtctttttattccttcctttaatttatggtgtaa |
41707549 |
T |
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| Q |
215 |
ttttctaatacactatgcaattttactttta-ttatcataattatagttaatagtttcttatca |
277 |
Q |
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| T |
41707548 |
ttttctaatacactatgcaattttacttttatttatcataattatagttaatagtttcttatca |
41707485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 41717422 - 41717373
Alignment:
| Q |
228 |
tatgcaattttacttttattatcataattatagttaatagtttcttatca |
277 |
Q |
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| T |
41717422 |
tatgcaattttacatttattatcataattatagttaataatttcttatca |
41717373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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