View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2271_low_1 (Length: 379)
Name: NF2271_low_1
Description: NF2271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2271_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 167 - 359
Target Start/End: Complemental strand, 44470686 - 44470494
Alignment:
| Q |
167 |
atacgtacataaagccttttatttaagattcaataacgtatacattcatgtgtacgctatattgttgttcaaatgatttttaataattttgaattaaagg |
266 |
Q |
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| T |
44470686 |
atacgtacataaagccttttatttaagattcaataatgtatacattcatgtgtacgctatattgttgttcaaatgatttttaataattttgaattaaagg |
44470587 |
T |
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| Q |
267 |
gtattcccttctttggattaatatttcaaaataaaaataaagatgagaatataaaatttatttacttgttgggtatgaaggagagtgaccaat |
359 |
Q |
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| T |
44470586 |
gtattcccttctttggattaatatttcaaaataaaaataaagatgagaatataaaatttatttacttgttgggtatgaaggagagtgaccaat |
44470494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 44470870 - 44470730
Alignment:
| Q |
13 |
gaacctgagtgccatcagcatctccaattaaaatatcgattgcatctgttgtaagtcttggagaactgcagcttgttgttatgatgatcttgtaaataca |
112 |
Q |
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| T |
44470870 |
gaacctgagtgccatcagcatctccaattaaaatatcgattgcatctgttgtaagtcttggagaactgcagcttgttgttatgatgatcttgtaaataca |
44470771 |
T |
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| Q |
113 |
gctaccacttgatagtgcagtctcattaatctgaaacatgc |
153 |
Q |
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| T |
44470770 |
gctaccacttgatagtgcagtctcattaatctgaaacatgc |
44470730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 44474643 - 44474568
Alignment:
| Q |
262 |
aaagggtattcccttctttggattaatatttcaaaataaaaataaagatgagaatataaaatttatttacttgttg |
337 |
Q |
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| T |
44474643 |
aaagggtattcccttgtttgaattaatatttcaaagtaaaaataaagatgagaatataaaatgtattaacttgttg |
44474568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 44474895 - 44474788
Alignment:
| Q |
14 |
aacctgagtgccatcagcatctccaattaaaatatcgattgcatctgttgtaagtcttggagaactgcagcttgttgttatgatgatcttgtaaatacag |
113 |
Q |
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| T |
44474895 |
aacctgattgccattagcgtctccaattataatgtcgattgtatctgttgtatgttccggagaactgcagcttgtctttatgtcgatcttgtaattgcag |
44474796 |
T |
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| Q |
114 |
ctaccact |
121 |
Q |
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|||||||| |
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| T |
44474795 |
ctaccact |
44474788 |
T |
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