View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2271_low_4 (Length: 245)
Name: NF2271_low_4
Description: NF2271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2271_low_4 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 9822060 - 9822286
Alignment:
| Q |
1 |
ataatatgaaaattgatggaccaatgcaaatttgtgagtttagatatagggagaccaatatcaaaagtaaaagcaaatacacgagattaaaattgtattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9822060 |
ataatatgaaaattgatggaccaatgcaaatttgtgagtttagatatagggagaccaatatcaaaagtaaaagcaaatacacgagattaaaattgtattc |
9822159 |
T |
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| Q |
101 |
aaacttatatgaaattttagaaaatttattctcttttttaaatctaaagtattctctatgtccaattgtgaagactaattctctcgaggtaactaaaatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9822160 |
aaacttatatgaaattttagaaaatttattctcttttttaaatctaaagtattctctatgtccaattgtgaagactaattctctcgatgtaactaaaatc |
9822259 |
T |
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| Q |
201 |
caattaatgggttataaacttccaatg |
227 |
Q |
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|||||||||||||| ||||||| |||| |
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| T |
9822260 |
caattaatgggttaaaaacttctaatg |
9822286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 9811276 - 9811487
Alignment:
| Q |
3 |
aatatgaaaattgatggaccaatgcaaatttgtgagtttagatatagggagaccaatatcaaaagtaaaagcaaatacacgagattaaaattgtattcaa |
102 |
Q |
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||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9811276 |
aatatgaaaattgatggacca-tgcaaattcgtgagtttaaatatagggagaccaatatcaaaagtaaaagcaaacacacgagattaaaattgtattcaa |
9811374 |
T |
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| Q |
103 |
acttatatgaaattttagaaaattta---ttctcttttttaaatctaaagtattctctatgtccaattgtgaagactaattctctcgaggtaactaaaat |
199 |
Q |
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| T |
9811375 |
acttatatgaaattttaaaaaatttatacttattttttttaaatctaaagtattctctatgttcaactgtgaagactaattctcctgaggtaactaaaat |
9811474 |
T |
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| Q |
200 |
ccaattaatgggt |
212 |
Q |
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| T |
9811475 |
ccaattaatgggt |
9811487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 9753576 - 9753785
Alignment:
| Q |
3 |
aatatgaaaattgatggaccaatgcaaatttgtgagtttagatatagggagaccaatatcaaaagtaaaagcaaatacacgagattaaaattgtattcaa |
102 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
9753576 |
aatatgaaaattgatggaccaatgcaaatttatgagtttaaatataaggagaccaatatcaaaagtaaatgcaaacacacgagattaaaattgtattcaa |
9753675 |
T |
|
| Q |
103 |
acttatatgaaattttagaaaatttattctcttttttaaatctaaagtattctctatgtccaattgtgaagactaattctctcgaggtaactaaaatcca |
202 |
Q |
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| T |
9753676 |
atttatatgaaattttaaaaaatttagact-tttttaaaatctaaagtattctctatgtctaactgcgaagattaattctttcgaggtaactaaaatcca |
9753774 |
T |
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| Q |
203 |
attaatgggtt |
213 |
Q |
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|||||||||| |
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| T |
9753775 |
tttaatgggtt |
9753785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 9750661 - 9750870
Alignment:
| Q |
3 |
aatatgaaaattgatggaccaatgcaaatttgtgagtttagatatagggagaccaatatcaaaagtaaaagcaaatacacgagattaaaattgtattcaa |
102 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| ||||| |||| ||||||||||||||||||| |
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| T |
9750661 |
aatatgaaaattgatggaccaatgcaaattcgtgagtttaaatatatggagaccaatatcaaaagtaaatgcaaacacacaagattaaaattgtattcaa |
9750760 |
T |
|
| Q |
103 |
acttatatgaaattttagaaaatttattctcttttttaaatctaaagtattctctatgtccaattgtgaagactaattctctcgaggtaactaaaatcca |
202 |
Q |
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||||||||||||||||| || |||| || |||| ||||||||||||| ||||||||| || | ||||||||||| ||||||| ||||||||||||| |
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| T |
9750761 |
acttatatgaaattttaaaatttttagact-ttttaaaaatctaaagtatcctctatgtctaactacgaagactaattatctcgagataactaaaatcca |
9750859 |
T |
|
| Q |
203 |
attaatgggtt |
213 |
Q |
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|||||||||| |
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| T |
9750860 |
tttaatgggtt |
9750870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 1509 - 1729
Alignment:
| Q |
3 |
aatatgaaaattgatggaccaatgcaaatttgtgagtttagatatagggagaccaatatcaaaagtaaaagcaaatacacgagattaaaattgtattcaa |
102 |
Q |
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||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
1509 |
aatatgaaaattgatggaccaatacaaattcgtgagtttaaatatagggagaccaacatcaaaagtaaaagcaaacacacaagattaaaattgtattcaa |
1608 |
T |
|
| Q |
103 |
acttatatgaaattttagaaaatttattctctttttt----------aaatctaaagtattctctatgtccaattgtgaagactaattctctcgaggtaa |
192 |
Q |
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|||||||||||||||| ||||||| | || |||||| |||| ||||| ||||| |||||||| | ||||||||||||||||| | |||| |
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| T |
1609 |
acttatatgaaattttcaaaaatttgtacttttttttttattttaaaaaatataaagcattctttatgtccatctttgaagactaattctctcaaagtaa |
1708 |
T |
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| Q |
193 |
ctaaaatccaattaatgggtt |
213 |
Q |
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|||||||| |||||||||||| |
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| T |
1709 |
ctaaaatctaattaatgggtt |
1729 |
T |
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