View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_10 (Length: 702)
Name: NF2272_high_10
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 264 - 694
Target Start/End: Complemental strand, 31663833 - 31663403
Alignment:
| Q |
264 |
acttatcctaattggcagaaggaaaatgatttactttttggtgtttttaattctaatcctataacaagtccttttgtagcactttttatatcaaattctc |
363 |
Q |
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| T |
31663833 |
acttatcctaattggcagaaggaaaatgatttactttttggtgtttttaattctaatcctataataagtccttttgtagcactttttatatcaaattctc |
31663734 |
T |
|
| Q |
364 |
tcatgtttcttgtgtttgattgggtaggttgctgctggtgccagaacaagattctttgatagtgaaaactgtcattatttacatcaacgactcaaggttc |
463 |
Q |
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| T |
31663733 |
tcatgtttcttgtgtttgattgggtaggttgctgctggtgccagaacaagattctttgatagtgaaaactgtcattatttacatcaacgactcaaggttc |
31663634 |
T |
|
| Q |
464 |
aattttttaccaccaggcagctaaatatgtatatgtagatatgcatttcttgttgtaattttgtattaccttgatgaatgtagattactcagaagattta |
563 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663633 |
aattttttaccaccaggcagctaaatatgtatatgtagatatgcatttcttgttgtaattttgtattaccttgatgaatgtagattactcagaagattta |
31663534 |
T |
|
| Q |
564 |
tgatggacaaaaagtaacttatctcctacaagcataactgaatgaacactatgaatatatctctgcaagaatgcaacaggtctctacctcttccatataa |
663 |
Q |
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| T |
31663533 |
tgatggacaaaaagtaacttatctcctacaagcataactgaatgaacactatgaatatatctctgcaagaatgcaacaggtctctacctcttccatataa |
31663434 |
T |
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| Q |
664 |
tacttatcttattattgctattagtataatc |
694 |
Q |
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||||||||||||||||||||||| ||||||| |
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| T |
31663433 |
tacttatcttattattgctattattataatc |
31663403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 31664051 - 31663830
Alignment:
| Q |
20 |
actagaatcacaagagaagatggaaacagtgcttgatgatgaagggttctgggaagatctaatgtttagtatgaaatttgagggtagatttgacattcca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31664051 |
actagaatcacaagagaagatggaaacagtgcttgatgatgaagggttctgggaagatctaatgtttagtatgaaatttgagggtagatttgacattcca |
31663952 |
T |
|
| Q |
120 |
acttctgaagataacaatgagaatgaagatgattcaagtgaaccactgagtcaagaatttagggttaactcttttcattcagttcactagcttcaagtca |
219 |
Q |
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| T |
31663951 |
acttctgaagataacaatgagaatgaagatgattcaagtgaaccactgagtcaagaatttagggttaactcttttcattcagttcactagcttcaagtca |
31663852 |
T |
|
| Q |
220 |
tacaaaagtcaatggtttactt |
241 |
Q |
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|||||||||||||||||||||| |
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| T |
31663851 |
tacaaaagtcaatggtttactt |
31663830 |
T |
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