View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_100 (Length: 215)
Name: NF2272_high_100
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_100 |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 11154807 - 11154714
Alignment:
| Q |
108 |
ccctttactgtgtaagctctcgtcatttctcacaatacgtctccacgatactctcttgcgattattttgtagggtttttcagggactggttttt |
201 |
Q |
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| T |
11154807 |
ccctttactgtgtaagctctcgtcatttctcacaatacggctccacgatactctcttgcgattattttgtagggtttttcagggagtggttttt |
11154714 |
T |
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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11154917 - 11154878
Alignment:
| Q |
1 |
catcgttctgaagatttggtttctttggtgctgcttgaat |
40 |
Q |
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| T |
11154917 |
catcgttctgaagatttggtttctttggtgctgcttgaat |
11154878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 43952276 - 43952314
Alignment:
| Q |
108 |
ccctttactgtgtaagctctcgtcatttctcacaatacg |
146 |
Q |
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| T |
43952276 |
ccctttaatgtgtaagctctcgtcatttctcacaatacg |
43952314 |
T |
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