View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_11 (Length: 630)
Name: NF2272_high_11
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 24 - 394
Target Start/End: Original strand, 44122280 - 44122648
Alignment:
| Q |
24 |
tttgcaaccttctcttgataaattttgagacttaaaattaacaattctcattgagggttaactaactttttgta-tgggttaattatagactcttttagt |
122 |
Q |
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| T |
44122280 |
tttgcaaccttctcatgataaattttgagacttaaaattaacaattcttattgagggttaactaactttttgtggtgggttaattatagactcttttagt |
44122379 |
T |
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| Q |
123 |
tgttgttagcttagnnnnnnnngggcaccctatccattgttgcatttctacctgtcctagaagatatctttcattttctcaaccttcaaaattgaatcgg |
222 |
Q |
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| T |
44122380 |
tgttgttagcttagaaaaaaa-gggcaccccatccactgtttcatttctacctgtcctagaagatatctttcattttctcaaccttcaaaattgagtcgg |
44122478 |
T |
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| Q |
223 |
gcaagtatctactatatttataaagaagtcaatagttgtgcagattttctataaaactcggggcaccgtgaatattttaattggactatattttttcttc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44122479 |
gcaagtatctactatatttataaagaagtcaatagttgtgcatattttctataaaactcggggcaccgtgaatattttaattggactatattttt--ttc |
44122576 |
T |
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| Q |
323 |
tcctcatccctctcttagtaataatttacacttcgatgtaatggaatccaaacatgagaacaacaccagtga |
394 |
Q |
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| T |
44122577 |
tcctcatccctctcttagtattaatttacacttcgatgtaatggaatccaaatatgagaacaacatcagtga |
44122648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 408 - 623
Target Start/End: Original strand, 44123621 - 44123836
Alignment:
| Q |
408 |
aatgcaaacgtatagccttaaaccaaacttgatatgtctatccaacttagtgtgtgtttaatttcccatttgcaacacacaaaaacgtatttgcacattt |
507 |
Q |
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| T |
44123621 |
aatgcaaacatatagccttaaaccaaacttgatatgtctatccaacttagtgtgtgtttagtttcccatttgcaacacacaaaaacatatatgcatattt |
44123720 |
T |
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| Q |
508 |
cacagtgcatttttgtcgtgatttcgaaaaactccaaacactaacttttacaccaacgtggttttcatcaaaccacgttttacaaaatggtgccaaatat |
607 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44123721 |
cacggtgcatttttgtcgtgatttcgaaaaactccaaacactaacttttacaccaacgtggttttcatcaaaccacgttttacaaaatggtgccaaacat |
44123820 |
T |
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| Q |
608 |
acacttagcctatgct |
623 |
Q |
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| T |
44123821 |
gcacttagcctatgct |
44123836 |
T |
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