View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_16 (Length: 559)
Name: NF2272_high_16
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 18 - 547
Target Start/End: Complemental strand, 30951613 - 30951084
Alignment:
| Q |
18 |
aattcaaaacagaccccattttcaaaacatcaatgtaattcattctcaacaagctagtgaaattaacactagtattcatcaccaatggagcattaaccat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30951613 |
aattcaaaacagaccccattttcaaaacatcaatgtaattcattctcaacaagctagtgaaattaacactagtattcatcaccaatggagcattaaccat |
30951514 |
T |
|
| Q |
118 |
aaactgacactcattcaaggaatagttattgtgctcaagtgcctccgtattaaaaacagcaaaagaatagtgtgtagcattttctgcacattctacttca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30951513 |
aaactgacactcattcaaggaatagttattgtgctcaagtgcctccgtattaaaaacagcaaaagaatagtgtgtagcattttctgcacattctacttca |
30951414 |
T |
|
| Q |
218 |
taggtaaggtaatgtataggttctgttgtacagttatagaagaaagagaggttagaattttcagaactataggtaaatggggtttgatcaagggcaaggc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30951413 |
taggtaaggtaatgtataggttctgttgtacagttatagaagaaagagaggttagaattttcagaactataggtaaatggggtttgatcaagggcaaggc |
30951314 |
T |
|
| Q |
318 |
tgtaattatatataggagcaggacacttgtcttcatagacagctaagttggatgcaataaaagaagaatttgagtaagagatagtttttactataaggtc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30951313 |
tgtaattatatataggagcaggacacttgtcttcatagacagctaagttggatgcaataaaagaagaatttgagtaagagatagtttttactataagatc |
30951214 |
T |
|
| Q |
418 |
ataatttgaggttttgagaattggattgttgttcttgcaagtgatctcaaattgtggatagccacaaaatgaatcttgttgataaggaatccagaaggga |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30951213 |
ataatttgaggttttgagaattggattgttgttcttgcaagtgatctcaaattgtggatagccacaaaatgaatcttgttgataaggaatccagaaggga |
30951114 |
T |
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| Q |
518 |
tactttatggagggaccttttccacaggtt |
547 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
30951113 |
tactttatggagggaccttttccacaggtt |
30951084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 547
Target Start/End: Complemental strand, 31015948 - 31015425
Alignment:
| Q |
18 |
aattcaaaacagaccccattttcaaaacatcaatgtaattcattctcaacaagctagtgaaattaacactagtattcatcaccaatggagcattaaccat |
117 |
Q |
| |
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|||||||||| ||||||||||||||||| || || ||||||||| ||||||||||||||||||||||| |||| |||| |||||||||||||||||||| |
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| T |
31015948 |
aattcaaaaccgaccccattttcaaaacgtcgatataattcattttcaacaagctagtgaaattaacattagtgttcaaaaccaatggagcattaaccat |
31015849 |
T |
|
| Q |
118 |
aaactgacactcattcaaggaatagttattgtgctcaagtgcctccgtattaaaaacagcaaaagaatagtgtgtagcattttctgcacattctacttca |
217 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||| ||| ||| |||||||||||||||||| |||||||||||| ||||||||||| |||| |
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| T |
31015848 |
aaactgacattcattcaaggaatagtttttgtgctcaagtgcttccttatgaaaaacagcaaaagaataatgtgtagcatttgttgcacattctatttca |
31015749 |
T |
|
| Q |
218 |
taggtaaggtaatgtataggttctgttgtacagttatagaagaaagagaggttagaattttcagaactataggtaaatggggtttgatcaagggcaaggc |
317 |
Q |
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|| ||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||| ||||| |
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| T |
31015748 |
taagtagggtaatctataggttctgttgtacagttatagaagaaagagaggttggaattttcaaaactatatgtaaatggagtttgatc------aaggc |
31015655 |
T |
|
| Q |
318 |
tgtaattatatataggagcaggacacttgtcttcatagacagctaagttggatgcaataaaagaagaatttgagtaagagatagtttttactataaggtc |
417 |
Q |
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|||||||||| |||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||| |
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| T |
31015654 |
tgtaattatacataggagcaggacagttttcttcatagacatctaagttggatgcaataaaagacgaatttgagtacgagatgttttttactaataggtc |
31015555 |
T |
|
| Q |
418 |
ataatttgaggttttgagaattggattgttgttcttgcaagtgatctcaaattgtggatagccacaaaatgaatcttgttgataaggaatccagaaggga |
517 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| |
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| T |
31015554 |
ataatttgaggttttgagaattggattgttgttcatgcaagtgatctcaaattgtggatagccacaaaatgagtcttgttgaaaaggaatccagaaagga |
31015455 |
T |
|
| Q |
518 |
tactttatggagggaccttttccacaggtt |
547 |
Q |
| |
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||||||||||| |||||||||||||||||| |
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| T |
31015454 |
tactttatggaaggaccttttccacaggtt |
31015425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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