View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2272_high_17 (Length: 532)
Name: NF2272_high_17
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 19 - 524
Target Start/End: Original strand, 281120 - 281626
Alignment:
| Q |
19 |
agatggtgcaaaagaaaggaaaccaatttgtagtgaatgaccaacctttctatgtaaatggattcaacacttattggttgatggtatttgctgcggatga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
281120 |
agatggtgcaaaagaaaggaaaccaatttgtagtgaatgaccaacctttctatgtaaatggattcaacacttattggttgatggtatttgctgcggacga |
281219 |
T |
|
| Q |
119 |
gtcgacaagaggaagggtcactcaggtgttcaaacatgcatcctcagttggcatgacagtttgtaggacttgggcgtttaatgatggccaatggagagcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
281220 |
gtcgacaagaggaagggtcactcaggtgttcaaacatgcatcctcagttggcatgacagtttgtaggacttgggcgtttaatgatggccaatggagagcc |
281319 |
T |
|
| Q |
219 |
cttcagaaatctccatcactttatgatgaagtagtattcaaagccctggattttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
281320 |
cttcagaaatctccatcactttatgatgaagtagtattcaaagccctggattttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcat |
281419 |
T |
|
| Q |
319 |
tggttaacaattgggagacatatggtggaaaagcacaatatgtcaagtggggtaatgctgctggccttaacttgacctctgatgatgactttttctcaca |
418 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
281420 |
tggttaacaattgggaggcatatggtggaaaagcacaatatgtcaagtggggtaatgctgctggccttaacttgacctctgatgatgactttttctcaca |
281519 |
T |
|
| Q |
419 |
tccaactctcagaggctactacaaggaccatgtcaaggcaagttccttgagatgtacctaaaacttaatgcttcctg-tttttcttttaaactaatttgg |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
281520 |
tccaactctcagaggctactacaaggaccatgtcaaggcaagttccttgagatgtacctaaaacttaatgcttcctgttttttcttttaaactaatttgg |
281619 |
T |
|
| Q |
518 |
ttcctat |
524 |
Q |
| |
|
||||||| |
|
|
| T |
281620 |
ttcctat |
281626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 19 - 524
Target Start/End: Complemental strand, 634732 - 634226
Alignment:
| Q |
19 |
agatggtgcaaaagaaaggaaaccaatttgtagtgaatgaccaacctttctatgtaaatggattcaacacttattggttgatggtatttgctgcggatga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
634732 |
agatggtgcaaaagaaaggaaaccaatttgtagtgaatgaccaacctttctatgtaaatggattcaacacttattggttgatggtatttgctgcggacga |
634633 |
T |
|
| Q |
119 |
gtcgacaagaggaagggtcactcaggtgttcaaacatgcatcctcagttggcatgacagtttgtaggacttgggcgtttaatgatggccaatggagagcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
634632 |
gtcgacaagaggaagggtcactcaggtgttcaaacatgcatcctcagttggcatgacagtttgtaggacttgggcgtttaatgatggccaatggagagcc |
634533 |
T |
|
| Q |
219 |
cttcagaaatctccatcactttatgatgaagtagtattcaaagccctggattttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
634532 |
cttcagaaatctccatcactttatgatgaagtagtattcaaagccctggattttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcat |
634433 |
T |
|
| Q |
319 |
tggttaacaattgggagacatatggtggaaaagcacaatatgtcaagtggggtaatgctgctggccttaacttgacctctgatgatgactttttctcaca |
418 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
634432 |
tggttaacaattgggaggcatatggtggaaaagcacaatatgtcaagtggggtaatgctgctggccttaacttgacctctgatgatgactttttctcaca |
634333 |
T |
|
| Q |
419 |
tccaactctcagaggctactacaaggaccatgtcaaggcaagttccttgagatgtacctaaaacttaatgcttcctgt-ttttcttttaaactaatttgg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
634332 |
tccaactctcagaggctactacaaggaccatgtcaaggcaagttccttgagatgtacctaaaacttaatgcttcctgttttttcttttaaactaatttgg |
634233 |
T |
|
| Q |
518 |
ttcctat |
524 |
Q |
| |
|
||||||| |
|
|
| T |
634232 |
ttcctat |
634226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 19 - 524
Target Start/End: Complemental strand, 820535 - 820029
Alignment:
| Q |
19 |
agatggtgcaaaagaaaggaaaccaatttgtagtgaatgaccaacctttctatgtaaatggattcaacacttattggttgatggtatttgctgcggatga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
820535 |
agatggtgcaaaagaaaggaaaccaatttgtagtgaatgaccaacctttctatgtaaatggattcaacacttattggttgatggtatttgctgcggacga |
820436 |
T |
|
| Q |
119 |
gtcgacaagaggaagggtcactcaggtgttcaaacatgcatcctcagttggcatgacagtttgtaggacttgggcgtttaatgatggccaatggagagcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
820435 |
gtcgacaagaggaagggtcactcaggtgttcaaacatgcatcctcagttggcatgacagtttgtaggacttgggcgtttaatgatggccaatggagagcc |
820336 |
T |
|
| Q |
219 |
cttcagaaatctccatcactttatgatgaagtagtattcaaagccctggattttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
820335 |
cttcagaaatctccatcactttatgatgaagtagtattcaaagccctggattttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcat |
820236 |
T |
|
| Q |
319 |
tggttaacaattgggagacatatggtggaaaagcacaatatgtcaagtggggtaatgctgctggccttaacttgacctctgatgatgactttttctcaca |
418 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
820235 |
tggttaacaattgggaggcatatggtggaaaagcacaatatgtcaagtggggtaatgctgctggccttaacttgacctctgatgatgactttttctcaca |
820136 |
T |
|
| Q |
419 |
tccaactctcagaggctactacaaggaccatgtcaaggcaagttccttgagatgtacctaaaacttaatgcttcctgt-ttttcttttaaactaatttgg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
820135 |
tccaactctcagaggctactacaaggaccatgtcaaggcaagttccttgagatgtacctaaaacttaatgcttcctgttttttcttttaaactaatttgg |
820036 |
T |
|
| Q |
518 |
ttcctat |
524 |
Q |
| |
|
||||||| |
|
|
| T |
820035 |
ttcctat |
820029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 8e-53; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 265 - 466
Target Start/End: Complemental strand, 27498430 - 27498229
Alignment:
| Q |
265 |
tggattttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcattggttaacaattgggagacatatggtggaaaagcacaatatgtcaa |
364 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||||| || ||||||||||||| |||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
27498430 |
tggactttgtggtaagtgaagcaaagaaatacaaaatcaggctgatattatcattggccaacaattgggaggcatatggtggaaaagcacaatatgtgaa |
27498331 |
T |
|
| Q |
365 |
gtggggtaatgctgctggccttaacttgacctctgatgatgactttttctcacatccaactctcagaggctactacaaggaccatgtcaaggcaagttcc |
464 |
Q |
| |
|
||||| || | ||||||||||||||||||||||||||||||||| | | ||||| |||| || ||| ||||||||||| ||| || |||||||||||| |
|
|
| T |
27498330 |
atggggcaaagatgctggccttaacttgacctctgatgatgacttctacacacattcaacccttagaagctactacaagtcccacgttaaggcaagttcc |
27498231 |
T |
|
| Q |
465 |
tt |
466 |
Q |
| |
|
|| |
|
|
| T |
27498230 |
tt |
27498229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 265 - 466
Target Start/End: Complemental strand, 27519902 - 27519701
Alignment:
| Q |
265 |
tggattttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcattggttaacaattgggagacatatggtggaaaagcacaatatgtcaa |
364 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||||| || ||||||||||||| |||||||||||| |||||||||||||| |||||||||| || |
|
|
| T |
27519902 |
tggactttgtggtaagtgaagcaaagaaatacaaaatcaggctgatattatcattggccaacaattgggagtcatatggtggaaaatcacaatatgtgaa |
27519803 |
T |
|
| Q |
365 |
gtggggtaatgctgctggccttaacttgacctctgatgatgactttttctcacatccaactctcagaggctactacaaggaccatgtcaaggcaagttcc |
464 |
Q |
| |
|
||||| || | ||||||||||||||||||||||||||||||||| | | ||||| |||| || ||| | ||||||||| |||||| |||||||||||| |
|
|
| T |
27519802 |
atggggcaaagatgctggccttaacttgacctctgatgatgacttctacacacattcaacccttagaagttactacaagtcccatgttaaggcaagttcc |
27519703 |
T |
|
| Q |
465 |
tt |
466 |
Q |
| |
|
|| |
|
|
| T |
27519702 |
tt |
27519701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 27498832 - 27498603
Alignment:
| Q |
30 |
aagaaaggaaaccaatttgtagtgaatgaccaacctttctatgtaaatggattcaacacttattggttgatggtatttgctgcggatgagtcgacaagag |
129 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| || ||||| ||| | |||||||| ||||| || || |||| |
|
|
| T |
27498832 |
aagaaaggaaaccaatttgtggtgaatggtcagcctttctatataaatggattcaacacatactggttaatgatgtttgctgcagatgactccaccagag |
27498733 |
T |
|
| Q |
130 |
gaagggtcactcaggtgttcaaacatgcatcctcagttggcatgacagtttgtaggacttgggcgtttaatgatggccaatggagagcccttcagaaatc |
229 |
Q |
| |
|
||| |||||| |||| |||||||| ||||||||| | || ||||||||||||||||||||||| || ||||||||||||||| | ||||| || ||||| |
|
|
| T |
27498732 |
gaaaagtcactgaggttttcaaacaagcatcctcactaggtatgacagtttgtaggacttgggctttcaatgatggccaatggcgggccctacaaaaatc |
27498633 |
T |
|
| Q |
230 |
tccatcactttatgatgaagtagtattcaa |
259 |
Q |
| |
|
|| || ||||||| |||| ||| ||||| |
|
|
| T |
27498632 |
cccttcggtttatgacgaagaagtcttcaa |
27498603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 209
Target Start/End: Complemental strand, 27520267 - 27520088
Alignment:
| Q |
30 |
aagaaaggaaaccaatttgtagtgaatgaccaacctttctatgtaaatggattcaacacttattggttgatggtatttgctgcggatgagtcgacaagag |
129 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||||||| |||||||||||||| | |||||||||||| | ||||| || ||||| || || ||| |
|
|
| T |
27520267 |
aagaaaggaaaccaatttgtggtgaatagtcagcctttctatataaatggattcaacgcatattggttgatgatgtttgcggcagatgactccaccagac |
27520168 |
T |
|
| Q |
130 |
gaagggtcactcaggtgttcaaacatgcatcctcagttggcatgacagtttgtaggacttgggcgtttaatgatggccaa |
209 |
Q |
| |
|
||| ||||| |||| |||||||| ||| ||||| | || |||||||||||||| |||||||| || | |||||||||| |
|
|
| T |
27520167 |
gaaaagtcaccgaggttttcaaacaagcaacctcactaggtatgacagtttgtagaacttgggctttcactgatggccaa |
27520088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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