View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2272_high_21 (Length: 517)
Name: NF2272_high_21
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 29 - 454
Target Start/End: Original strand, 22362803 - 22363228
Alignment:
| Q |
29 |
aatatagaaaggctacataaaattgaagaatgttagaaaaacatggtaacaagttaacataaagtggataatatgtaagtgaaacatgtgaaattataga |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22362803 |
aatatagaaaggctacataaaattgaagaatgttagaaaaacatggtaacaagataacataaagtggataatatgtgagtgaaacatgtgaaattataga |
22362902 |
T |
|
| Q |
129 |
tgcatatatgtacctgaaaagtatcacctaaacttgtagaggggtcaaaactgcatatgacatgaagtctctgaccttcacctatattcactaaataaaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22362903 |
agcatatatgtacctgaaaagtatcacctaaacttgtagaggggtcaaaactgcatatgacatgaagtctctgaccttcacctatattcactaaataaaa |
22363002 |
T |
|
| Q |
229 |
tacagtacctgctggaattacatacaaatcccccgtctttattctcctttcctctagttcatctccatatatgaatcccaactttgctacccctgcatcc |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22363003 |
tacagtacctgctggaattacatacaaatcccctgtctttattctcctttcctctagttcatctccatatatgaatcccaactttgctacccctgcatcc |
22363102 |
T |
|
| Q |
329 |
aagttgaaaatttcactctaaatttctctaatgacttgatgttcacttgttgcttcaaggcaatagaagctttaaaattgtgatgttaaattttgagaag |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22363103 |
aagttgaaaatttcactctaaatttctctaatgacttgatgttcacttgttgcttcaaggcaatagaagctttaaaattgtgatgttaaattttgagaag |
22363202 |
T |
|
| Q |
429 |
aaaaaatatactaaattgagtcacac |
454 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
22363203 |
taaaaaaatactaaattgagtcacac |
22363228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 439 - 501
Target Start/End: Original strand, 22363245 - 22363307
Alignment:
| Q |
439 |
ctaaattgagtcacacaaaaatgcatattaactcttcatactttaggcgtagttccttgtatt |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22363245 |
ctaaattgagtcacacaaaaatgcatattaactcttcatactttaggcctagttccttgtatt |
22363307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University