View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_25 (Length: 482)
Name: NF2272_high_25
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 49684289 - 49684761
Alignment:
| Q |
1 |
tacaacctctgaaacacacagtaagcatacactcaagaagatagtccagagacacaaaagctttactcaaaagcatcatcatcgtcatcaggaaggggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49684289 |
tacaacctctgaaacacacagtaagcatacactcaagaagatagtccagagacacaaaagctttactcaaaagcatcatcatcgtcatcaggaaggggtt |
49684388 |
T |
|
| Q |
101 |
gattagcagcttggagaagctcattctcatgtctgcaaaagaaccaataaatgagaaattcaaaataaacaattacattgcaattgaatgagaaaagcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49684389 |
gattagcagcttggagaagctcattctcatgtctgcaaaagaaccaataaatgagagattcaaaataaacaattacattgcaattgaatgagaaaagcaa |
49684488 |
T |
|
| Q |
201 |
ttttttag-----------atattcctaaaaaactaatggatgttatggtcttttagcatattagtatcgcatattcctaaacgaggcggataaatggaa |
289 |
Q |
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| T |
49684489 |
ttttttagcatactattagatattcctaaaaaactaatggatgttatggtcttttagcatattagtatcgcatattcctaaacgaggcggataaatggaa |
49684588 |
T |
|
| Q |
290 |
gggaaagaatagagaaggaaaggaagggacagggggatgatgaaaatgaaattatttctcaatatttgaattttatttttacaaataaccattcccatgc |
389 |
Q |
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| T |
49684589 |
gggaaagaatagagaaggaaaggaagggac--ggggatgatgaaaatgaaattatttctcaatatttgaattttatttttacaaataaccattcccatgc |
49684686 |
T |
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| Q |
390 |
aatctcttcccatcacctacacaaatctaaaaacaatgtggtggtaacttgaagagcatatttgaacttaaaaac |
464 |
Q |
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| T |
49684687 |
aatctcttcccatcacctacacaaatctaaaaacaatgtggtggtaacttgaagagcatatttgaacttaaaaac |
49684761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 64 - 284
Target Start/End: Original strand, 49689735 - 49689967
Alignment:
| Q |
64 |
tactcaaaagcatcatcatcgtcatcaggaaggggttgattagcagcttggagaagctcattctcatgtctgcaaaagaaccaataaatgagaaattcaa |
163 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
49689735 |
tactcaaatgtatcatcatcgtcatcaggaaggggttgattagcagcttggagaagctcattctcttgtctgcaaaagaaccaataaatgagaaattaaa |
49689834 |
T |
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| Q |
164 |
aataaacaattacattgcaattgaatgagaaaagcaatttttta-----------gatattcct-aaaaaactaatggatgttatggtcttttagcatat |
251 |
Q |
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| T |
49689835 |
aataaacaattacactgcaattgaatgagaaaagcaatgttttagcatactatttgatattcctaaaaaaactaatggatgttatggtcttttagcatac |
49689934 |
T |
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| Q |
252 |
tagtatcgcatattcctaaacgaggcggataaa |
284 |
Q |
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| T |
49689935 |
tagtattgcatattcctaaacgaggcggataaa |
49689967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 331 - 464
Target Start/End: Original strand, 49689975 - 49690108
Alignment:
| Q |
331 |
gaaaatgaaattatttctcaatatttgaattttatttttacaaataaccattcccatgcaatctcttcccatcacctacacaaatctaaaaacaatgtgg |
430 |
Q |
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||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| |||||| ||| |
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| T |
49689975 |
gaaaatgaaataatttctcaatgtttgaattttatttttgcaaataaccattcccatgcaatctcttcccatcaccaacaaaaatctaacaacaatatgg |
49690074 |
T |
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| Q |
431 |
tggtaacttgaagagcatatttgaacttaaaaac |
464 |
Q |
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| T |
49690075 |
tggtaacttgaacagcatatctgaacttaaaaac |
49690108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 49694537 - 49694702
Alignment:
| Q |
1 |
tacaacctctgaaacacacagtaagcatacactcaagaagatagtccagagacacaaaagctttactcaaaagcatcatcatcgtcatcaggaaggggtt |
100 |
Q |
| |
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|||| |||| |||||||||||||||||||||||||||| ||| || | | || ||| | |||||||| ||||| || || ||||||||||| |||| |
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| T |
49694537 |
tacagcctccgaaacacacagtaagcatacactcaagatgatggtg--ggttcgcacaagttctactcaaatgcatcgtcgtcatcatcaggaagtggtt |
49694634 |
T |
|
| Q |
101 |
gattagcagcttggagaagctcattctcatgtctgcaaaagaacc-aataaatgagaaattcaaaata |
167 |
Q |
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| T |
49694635 |
ggttagcagcttgttgaagctcattctcatgtctgcaaaagcaccaaatacataagaaattcaaaata |
49694702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 49694823 - 49694887
Alignment:
| Q |
286 |
ggaagggaaagaatagagaaggaaaggaagggacagggggatgatgaaaatgaaattatttctcaat |
352 |
Q |
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|||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||| |||| |
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| T |
49694823 |
ggaagggaaagactagataaggaaaggaatggaca--gggatgatgaaaatgaaattatttcccaat |
49694887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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