View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2272_high_27 (Length: 466)

Name: NF2272_high_27
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2272_high_27
NF2272_high_27
[»] chr3 (3 HSPs)
chr3 (1-425)||(109510-109931)
chr3 (136-182)||(20269974-20270020)
chr3 (64-136)||(28767453-28767525)
[»] chr2 (4 HSPs)
chr2 (136-182)||(2007187-2007233)
chr2 (136-179)||(3304565-3304608)
chr2 (136-182)||(23220975-23221021)
chr2 (64-136)||(23221036-23221108)
[»] chr7 (2 HSPs)
chr7 (136-183)||(3120840-3120887)
chr7 (142-182)||(28369290-28369330)
[»] chr4 (2 HSPs)
chr4 (136-179)||(50853917-50853960)
chr4 (136-182)||(28501941-28501987)
[»] chr8 (3 HSPs)
chr8 (136-182)||(8471908-8471954)
chr8 (136-213)||(8472657-8472731)
chr8 (140-180)||(32593533-32593573)
[»] chr5 (2 HSPs)
chr5 (136-182)||(27828438-27828484)
chr5 (141-213)||(4446371-4446440)
[»] chr1 (1 HSPs)
chr1 (140-182)||(46859682-46859724)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 109510 - 109931
Alignment:
Q  1 aaaaagaaagtggaaaatgctgtaaaatatgtaaatttgtgtgtcgataatgaaatcatatatacaccttgtatttataatggttttcctggaaatgtat 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    | |||||||||||||||||| || ||| ||||||||    
T  109510 aaaaagaaagtggaaaatgctgcaaaatatgtaaatttgtgtgtcgataatgaaatcaca----ccccttgtatttataatggtattactgtaaatgtat 109605  T
Q  101 taaatgtttaaggaataagcactagcttagaaagtt---------------aataacaatcaatctagaaagttgtacaagtaaagtaatatctaaatta 185  Q
    ||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||| ||||||||||||||||       
T  109606 taaatgtttaaggaataagcactagcttagaaagttgtatacgcgagaagtaataacaatcaatctagaaagttgtacaattaaagtaatatctaaa--- 109702  T
Q  186 agatttttaacttaacacccctcctcaaattggaagagaaagcaccgttaataatcaaatcatatgtgggtagatagtctatgaatgatagaaaacacct 285  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||| |  | ||||||||||||||||||||||||    
T  109703 -gatttttaacttaacacccctcctcaaattggaagagaaagcaccgttaataatca-----tatgtggg-atct-gtctatgaatgatagaaaacacct 109794  T
Q  286 aaaaatgtggcacaaagggacctacagtgataaacaactactgaaaaatatacaagatccttaggaaccgaatactactaataataggtggtgctgccgg 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  109795 aaaaatgtggcacaaagggacctacagtgataaacaactactgaaaaatatacaagatccttaggaaccgaatactac---taataggtggtgctgccgg 109891  T
Q  386 cggaaaatgttgtcgaaacaagtcaacaacagtgaagcac 425  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  109892 cggaaaatgttgtcgaaacaagtcaacaacagtgaagcac 109931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 20269974 - 20270020
Alignment:
Q  136 taataacaatcaatctagaaagttgtacaagtaaagtaatatctaaa 182  Q
    |||||||||||||||||| || |||||||| ||||| ||||||||||    
T  20269974 taataacaatcaatctaggaaattgtacaattaaaggaatatctaaa 20270020  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 28767453 - 28767525
Alignment:
Q  64 acaccttgtatttataatggttttcctggaaatgtattaaatgtttaaggaataagcactagcttagaaagtt 136  Q
    ||||| |||||||||||||||||| |   ||||||||| |||| |||| || ||||||||||| ||| |||||    
T  28767453 acaccctgtatttataatggttttacaataaatgtattgaatgcttaatgagtaagcactagcctaggaagtt 28767525  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 2007187 - 2007233
Alignment:
Q  136 taataacaatcaatctagaaagttgtacaagtaaagtaatatctaaa 182  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||||    
T  2007187 taataacaatcaatctaggaagttgtacaattaaaggaatatctaaa 2007233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 3304608 - 3304565
Alignment:
Q  136 taataacaatcaatctagaaagttgtacaagtaaagtaatatct 179  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||    
T  3304608 taataacaatcaatctaggaagttgtacaattaaaggaatatct 3304565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 23221021 - 23220975
Alignment:
Q  136 taataacaatcaatctagaaagttgtacaagtaaagtaatatctaaa 182  Q
    ||||| |||||||||||| ||||||||||| ||||| ||||||||||    
T  23221021 taatatcaatcaatctaggaagttgtacaattaaaggaatatctaaa 23220975  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 23221108 - 23221036
Alignment:
Q  64 acaccttgtatttataatggttttcctggaaatgtattaaatgtttaaggaataagcactagcttagaaagtt 136  Q
    |||||||||||||||||||||||||| | || || ||| |||| ||||  | ||||||||||| ||| |||||    
T  23221108 acaccttgtatttataatggttttcccgtaagtgcattgaatgcttaattagtaagcactagcataggaagtt 23221036  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 3120840 - 3120887
Alignment:
Q  136 taataacaatcaatctagaaagttgtacaagtaaagtaatatctaaat 183  Q
    |||| ||||||||||||| ||||||||||| ||||| |||||||||||    
T  3120840 taatgacaatcaatctaggaagttgtacaattaaaggaatatctaaat 3120887  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 28369330 - 28369290
Alignment:
Q  142 caatcaatctagaaagttgtacaagtaaagtaatatctaaa 182  Q
    |||||||||||| ||||||||||| ||||| ||||||||||    
T  28369330 caatcaatctaggaagttgtacaattaaaggaatatctaaa 28369290  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 50853960 - 50853917
Alignment:
Q  136 taataacaatcaatctagaaagttgtacaagtaaagtaatatct 179  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||    
T  50853960 taataacaatcaatctagaatgttgtacaattaaaggaatatct 50853917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 28501941 - 28501987
Alignment:
Q  136 taataacaatcaatctagaaagttgtacaagtaaagtaatatctaaa 182  Q
    |||| ||||||||||||| ||||||||||| ||||| ||||||||||    
T  28501941 taattacaatcaatctaggaagttgtacaattaaaggaatatctaaa 28501987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 8471954 - 8471908
Alignment:
Q  136 taataacaatcaatctagaaagttgtacaagtaaagtaatatctaaa 182  Q
    |||||||||||||||||| ||||||||||| |||||  |||||||||    
T  8471954 taataacaatcaatctaggaagttgtacaattaaagggatatctaaa 8471908  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 8472731 - 8472657
Alignment:
Q  136 taataacaatcaatctagaaagttgtacaagtaaagtaatatctaaattaagatttttaac-ttaacacccctcctcaa 213  Q
    ||||||||| |||||||| ||||||||||| |||||  |||||||    |||||| ||||| |||||||||||||||||    
T  8472731 taataacaaccaatctaggaagttgtacaattaaagggatatcta----aagattcttaactttaacacccctcctcaa 8472657  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 32593573 - 32593533
Alignment:
Q  140 aacaatcaatctagaaagttgtacaagtaaagtaatatcta 180  Q
    |||||||||||||| ||||||||||| ||||| ||||||||    
T  32593573 aacaatcaatctaggaagttgtacaattaaaggaatatcta 32593533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 27828438 - 27828484
Alignment:
Q  136 taataacaatcaatctagaaagttgtacaagtaaagtaatatctaaa 182  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||||||    
T  27828438 taataacaatcaatctaggaagttgtacaattaagggaatatctaaa 27828484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 4446440 - 4446371
Alignment:
Q  141 acaatcaatctagaaagttgtacaagtaaagtaatatctaaattaagatttttaac-ttaacacccctcctcaa 213  Q
    ||||||||||||| ||||||||||| |||||  ||||||||||    ||| ||||| |||||||||||||||||    
T  4446440 acaatcaatctaggaagttgtacaattaaagggatatctaaat----attcttaactttaacacccctcctcaa 4446371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 46859682 - 46859724
Alignment:
Q  140 aacaatcaatctagaaagttgtacaagtaaagtaatatctaaa 182  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||    
T  46859682 aacaatcaatctaggaagttgtacaattaaaggaatatctaaa 46859724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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