View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_29 (Length: 458)
Name: NF2272_high_29
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 28203774 - 28204103
Alignment:
| Q |
17 |
caaaatatactaccatgtggcatgaatcgtgtgggttcattgaacagtctagcctttttcaacaccagttagnnnnnnnnnnnnggtatgtgtgtgtggg |
116 |
Q |
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| T |
28203774 |
caaaatatactaccatgtggcatggatcgtgtgggttcattgaacagtctaacctttttcaacaccagttagtatatatatataggtatgt---tgtggg |
28203870 |
T |
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| Q |
117 |
tcatattataaaatgaaataatccaaatagtttatatcatgagagagaaattagatatatagcttttgtagtctttgataagagaattatatcatgggaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28203871 |
tcatattataaaatgaaataatccaaatagtttatatcatgagagagaaattagatatataacttttgtagtctttgataagagaattatatcatgggaa |
28203970 |
T |
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| Q |
217 |
aaggaagagcaccatgttgtgataagagtcaagttaagagaggaccttggagccctgctgaagatctcaaacttatagcttttgttcagaaatttggtca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28203971 |
aaggaagagcaccatgttgtgataagagtcaagttaagagaggaccttggagccctgctgaagatctcaaacttatagcttttgttcagaaatttggtca |
28204070 |
T |
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| Q |
317 |
tgaaaattggagagctctccctaaacaagcagg |
349 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
28204071 |
tgaaaattggagagctctccctaaacaagcagg |
28204103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 401 - 443
Target Start/End: Original strand, 28204149 - 28204191
Alignment:
| Q |
401 |
tcatctttctctctctttgtgtctgttttgttgtgaattggat |
443 |
Q |
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| T |
28204149 |
tcatccttctctctctttgtgtctgttttgttgtgaattggat |
28204191 |
T |
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