View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_30 (Length: 454)
Name: NF2272_high_30
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 32 - 436
Target Start/End: Original strand, 43499828 - 43500240
Alignment:
| Q |
32 |
ttaatgggatccaaattataagatttacatacgggcaagcaatgataattcatgtttacaatagacaacaacaagtttttcaagacaatcaaaaactgga |
131 |
Q |
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| T |
43499828 |
ttaatgggatccaaattataagatttacatacgggcaagcaatgataattcatgtttacaatagacaacaacaagtttttcaagacaatcaaaaactgga |
43499927 |
T |
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| Q |
132 |
gttttcaggaacagagccaaccaaatgaaaataatatnnnnnnntgcaaagctttagaatctcccctcaaagtttcaaaagatgtcaatgttaattattt |
231 |
Q |
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| T |
43499928 |
gttttcaggaacagagccaaccaaatgaaaataatataaaaaaatgcaaagctttagaatctcccctcaaagtttcaaaagatgtcaatgttaattacat |
43500027 |
T |
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| Q |
232 |
gtaatttttctatgcctgaaaagttatttgctcattacacgaagtcagaaacatattcaactag-nnnnnnnncctaaacaatatcgatctaaatcttct |
330 |
Q |
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| T |
43500028 |
gtaatttttctatgcctgaaaagttatttgctcattacacgaagtcagaaacatattcaactagtttttttttcctaaacaatatcgatctaaatcttct |
43500127 |
T |
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| Q |
331 |
atgaagatgtaaataataaatctactac--------tagtaataatcatgataaagaaaactcgaaactaatttacttatttgatctgaataagactctg |
422 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43500128 |
atgaagatgt-aataataaatctactactagcttagtagtaataatcatgataaagaaaactcgaaactaatttacttatttgatctgaataagactctg |
43500226 |
T |
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| Q |
423 |
accaagtgccacac |
436 |
Q |
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| T |
43500227 |
accaagtgccacac |
43500240 |
T |
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