View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_33 (Length: 436)
Name: NF2272_high_33
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 40208653 - 40208969
Alignment:
| Q |
1 |
ttcacctctttgtttattttctttaaagatgcaacgggcgaaatcacacacatcaaacgttaaaaagtgaagaattatagattcgaatagtttcaaatat |
100 |
Q |
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| T |
40208653 |
ttcacctctttgtttattttctttaaagatgcaatgggcgaaatcacacacatcaaacgttaaaaaatgaagaattacggattcgaatagtttcaaatat |
40208752 |
T |
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| Q |
101 |
atttgtggttaacctatttagattggtctgatgatattggtttggaacgagtattctcctcttcaaagttttaaatttaattttttcagatgtcagttta |
200 |
Q |
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| T |
40208753 |
atttgtggttaacctatttaatttagtctgatgatattggtttggaacgagtattctcctcttcaaagttttaaatttgattttttcagatgtcagttta |
40208852 |
T |
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| Q |
201 |
gtggactaatttaacatcttaaaaataattatgattttttacaatgagttatatttacgaaacgtgagacatcgcattctataaacaatgaaagtgactt |
300 |
Q |
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| T |
40208853 |
gttgactaatttaacttcttaaaaataattaagattttttacaatgagttatatttacgaaacttgagacatcgcattctataaacaatgaaagtgactt |
40208952 |
T |
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| Q |
301 |
tagacatatatttagtc |
317 |
Q |
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| T |
40208953 |
tagacatatatttagtc |
40208969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 393 - 426
Target Start/End: Original strand, 40209026 - 40209059
Alignment:
| Q |
393 |
aaattgcacttgtagaatatttttacatgatgat |
426 |
Q |
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| T |
40209026 |
aaattgcacttgtagaatatttttacatgatgat |
40209059 |
T |
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