View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_34 (Length: 423)
Name: NF2272_high_34
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Original strand, 13848135 - 13848531
Alignment:
| Q |
17 |
aagaactaaaccactttgaatttggtcgggttggtaggttcaatctagaattaaaaatcaaccaatcaataatataaacccagcattttagattatttga |
116 |
Q |
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| T |
13848135 |
aagaaccaaaccactttgaatttggtcgggttggtaggttcaatctagaattaaaaatcaaccaatcaataatataaacccaacattttagattatttga |
13848234 |
T |
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| Q |
117 |
gtcattgggcttatcagatttactcacacatcacatgtttgggttcaagtgtggtatcttcctctcttgtgtgtctatagtattaattcgttgttgttct |
216 |
Q |
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|| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13848235 |
gttattgggcttattagatttactcacacataacatgtttgggttcaagtgtggtatcttcctctcttgtgtgtctatagtattaattcgttgttgttct |
13848334 |
T |
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| Q |
217 |
caacattttttcagatcttcgacaagtggtatcatagttgagttatggttgaggctccaggaagaggctccaaatggcatgttccccatatgttccttga |
316 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13848335 |
caacattttctcagatcttcgacaagtggtatcatagttgagttatggttgaggccctaggaagaggctccaaatggcatgttccccatatgttccttga |
13848434 |
T |
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| Q |
317 |
tcagcatgcgacaaccctttctcgttgcaggtgcaactcaagcaatcgacgaacaatcgatatgattgaaattgagactcttgtgtccatccctttg |
413 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13848435 |
tcagcatgcgacaaccctttctcgttgcagttgcagctcaagcaatcgactaacaatcgatatgattgaaattgagactcttgtgtccatccctttg |
13848531 |
T |
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