View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_36 (Length: 417)
Name: NF2272_high_36
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 201 - 402
Target Start/End: Original strand, 24836097 - 24836298
Alignment:
| Q |
201 |
ggtaacaaagttttagtagttgactagttggtaaccatatttggaaatttgaatcatgtttctcattctatttcggatgttatagtcaattacaagcaga |
300 |
Q |
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| T |
24836097 |
ggtaacaaagttttagtagttgactagttggtaaccatatttggaaatttgaatcatgtttctcattctatttcggatgttatagtcaattacaagcaga |
24836196 |
T |
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| Q |
301 |
ttgacattggagaaatagaagacaagtattattatgctttggagaaataagaaaaatttgtataaagaagtgttgtaaattgcatcaatcatttccatgt |
400 |
Q |
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| T |
24836197 |
ttgacattggagaaatagaagacaagtattattatgctttggagaaataagaaaaatttgtataaagaagtgttgtaaattgcatcaatcatttccatgt |
24836296 |
T |
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| Q |
401 |
tg |
402 |
Q |
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|| |
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| T |
24836297 |
tg |
24836298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 24835879 - 24836075
Alignment:
| Q |
18 |
aatccaaacggggcctaattgccaaagttttagtctcaaaataaccttctttctttaatactatgctattaaatcaagaaaaatttccgtagtcgcataa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24835879 |
aatccaaacggggcctaattgccaaagttttagtctcaaaataaccttctttctttaatactatgctattaaatcaagaaaaatttccgtagtcgcataa |
24835978 |
T |
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| Q |
118 |
ttgatgtaaagcaacaagtgaattcaaattctataactatagtctataacataggaggccagtagcattaataatcataatttggtaacaaagtttt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24835979 |
ttgatgtaaagcaacaagtgaattcaaattctataactatagtctataacataggaggccagtagcattaataatcataatttggtaacaaagtttt |
24836075 |
T |
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