View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2272_high_38 (Length: 398)

Name: NF2272_high_38
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2272_high_38
NF2272_high_38
[»] chr3 (4 HSPs)
chr3 (270-387)||(299943-300060)
chr3 (279-387)||(30952963-30953071)
chr3 (279-387)||(30968775-30968883)
chr3 (279-374)||(43183342-43183437)
[»] chr8 (1 HSPs)
chr8 (270-387)||(33154790-33154907)
[»] chr1 (2 HSPs)
chr1 (279-387)||(37095126-37095234)
chr1 (281-356)||(49907551-49907626)
[»] chr4 (3 HSPs)
chr4 (270-387)||(3071324-3071440)
chr4 (270-387)||(50650293-50650411)
chr4 (279-378)||(40388654-40388753)
[»] scaffold0199 (2 HSPs)
scaffold0199 (121-270)||(9533-9669)
scaffold0199 (353-386)||(9667-9700)
[»] chr5 (1 HSPs)
chr5 (270-379)||(3170501-3170611)
[»] chr2 (1 HSPs)
chr2 (270-325)||(17976664-17976719)
[»] chr7 (1 HSPs)
chr7 (270-372)||(4105692-4105794)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 270 - 387
Target Start/End: Original strand, 299943 - 300060
Alignment:
Q  270 aagtaaagctactctcttttttgtggttgaaagctaaacatacatgtttttgttattgttatcatgattgatggagacattcgctaccttgtataggtgt 369  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||    
T  299943 aagtaaagctactctcttttttatggttgaaagctaaacaaacatgcttttgttattgctatcatgattggtggagacatccgctaccttgtatgggtgt 300042  T
Q  370 ccactaatttgtgtctgt 387  Q
    |||||||||| |||||||    
T  300043 ccactaatttttgtctgt 300060  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 279 - 387
Target Start/End: Complemental strand, 30953071 - 30952963
Alignment:
Q  279 tactctcttttttgtggttgaaagctaaacatacatgtttttgttattgttatcatgattgatggagacattcgctaccttgtataggtgtccactaatt 378  Q
    ||||||||||||||||||||||||||||||| ||||  ||||  ||||||| | ||||||| ||||||||| ||||||||||||| |||||||||| |||    
T  30953071 tactctcttttttgtggttgaaagctaaacagacatccttttactattgttttaatgattggtggagacatccgctaccttgtatgggtgtccactgatt 30952972  T
Q  379 tgtgtctgt 387  Q
    | |||||||    
T  30952971 tttgtctgt 30952963  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 279 - 387
Target Start/End: Complemental strand, 30968883 - 30968775
Alignment:
Q  279 tactctcttttttgtggttgaaagctaaacatacatgtttttgttattgttatcatgattgatggagacattcgctaccttgtataggtgtccactaatt 378  Q
    ||||||||||||||||||||||||||||||| ||||  ||||  ||||||| | ||||||| ||||||||| ||||||||||||| |||||||||| |||    
T  30968883 tactctcttttttgtggttgaaagctaaacagacatccttttactattgttttaatgattggtggagacatccgctaccttgtatgggtgtccactgatt 30968784  T
Q  379 tgtgtctgt 387  Q
    | |||||||    
T  30968783 tttgtctgt 30968775  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 279 - 374
Target Start/End: Original strand, 43183342 - 43183437
Alignment:
Q  279 tactctcttttttgtggttgaaagctaaacatacatgtttttgttattgttatcatgattgatggagacattcgctaccttgtataggtgtccact 374  Q
    |||| ||||||||||||||||||||||||||| |||  |||| ||||||||||| || ||| ||||| ||| ||||| ||||||| | ||||||||    
T  43183342 tactttcttttttgtggttgaaagctaaacatgcatccttttattattgttatcgtgcttggtggaggcatccgctatcttgtatggatgtccact 43183437  T

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Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 270 - 387
Target Start/End: Original strand, 33154790 - 33154907
Alignment:
Q  270 aagtaaagctactctcttttttgtggttgaaagctaaacatacatgtttttgttattgttatcatgattgatggagacattcgctaccttgtataggtgt 369  Q
    |||| ||| ||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||| | ||  ||||||| |||||    
T  33154790 aagttaagttactctcttttttgtggttgaaagctaaacagacatccttttgttattgttatcatgattggtggagacatccactttcttgtatgggtgt 33154889  T
Q  370 ccactaatttgtgtctgt 387  Q
    ||||| |||| |||||||    
T  33154890 ccactgatttttgtctgt 33154907  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 279 - 387
Target Start/End: Complemental strand, 37095234 - 37095126
Alignment:
Q  279 tactctcttttttgtggttgaaagctaaacatacatgtttttgttattgttatcatgattgatggagacattcgctaccttgtataggtgtccactaatt 378  Q
    |||| |||||||||| ||||||||||||||||||||  |||| |||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| |||    
T  37095234 tactttcttttttgtcgttgaaagctaaacatacatccttttattattgttatcatgattggtggagacatccgctatcttgtatgggtgtccactgatt 37095135  T
Q  379 tgtgtctgt 387  Q
      |||||||    
T  37095134 gatgtctgt 37095126  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 49907551 - 49907626
Alignment:
Q  281 ctctcttttttgtggttgaaagctaaacatacatgtttttgttattgttatcatgattgatggagacattcgctac 356  Q
    ||||||||| ||||||||||||| ||||||||||  |||  ||| |||||||||||||| ||||||||||||||||    
T  49907551 ctctcttttctgtggttgaaagcaaaacatacatcctttaattactgttatcatgattggtggagacattcgctac 49907626  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 270 - 387
Target Start/End: Original strand, 3071324 - 3071440
Alignment:
Q  270 aagtaaagctactctcttttttgtggttgaaagctaaacatacatgtttttgttattgttatcatgattgatggagacattcgctaccttgtataggtgt 369  Q
    |||||||||| ||||||||||| ||||||||||  ||||| ||||  ||||||||||||||||||||||| ||||||| | |||||||||| || ||||     
T  3071324 aagtaaagcttctctcttttttttggttgaaagtcaaacaaacatccttttgttattgttatcatgattggtggagacctccgctaccttg-atgggtgc 3071422  T
Q  370 ccactaatttgtgtctgt 387  Q
    | |||||||| |||||||    
T  3071423 caactaatttttgtctgt 3071440  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 387
Target Start/End: Original strand, 50650293 - 50650411
Alignment:
Q  270 aagtaaagctactctcttttttgtggttgaaagctaaacatacat-gtttttgttattgttatcatgattgatggagacattcgctaccttgtataggtg 368  Q
    |||||||| |||||||||||||||||||||||||||||||  |||  ||||| ||| |||||||||||| | |||||||||  ||||||||| || || |    
T  50650293 aagtaaagttactctcttttttgtggttgaaagctaaacaagcatccttttttttactgttatcatgataggtggagacatctgctaccttgcatggggg 50650392  T
Q  369 tccactaatttgtgtctgt 387  Q
    |||||| |||| |||||||    
T  50650393 tccactgatttatgtctgt 50650411  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 378
Target Start/End: Complemental strand, 40388753 - 40388654
Alignment:
Q  279 tactctcttttttgtggttgaaagctaaacatacatgtttttgttattgttatcatgattgatggagacattcgctaccttgtataggtgtccactaatt 378  Q
    ||||||| ||||||||||||||||| |||||  | | ||||  ||| |||||||||||||| |||| |||| |||||| |||||| | ||||||||||||    
T  40388753 tactctcatttttgtggttgaaagcaaaacaagcgtcttttatttactgttatcatgattggtggaaacatccgctactttgtatggatgtccactaatt 40388654  T

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Target: scaffold0199 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 270
Target Start/End: Original strand, 9533 - 9669
Alignment:
Q  121 tttggatatgatagagagaattaagagagaatgcattttaacattttgagatgtttgcctatatgaggaagtgggtnnnnnnntatttatatcatataac 220  Q
    |||||||||||||||||||| ||||||||| |||| || |||||||||||| ||||||||||          ||||       |||||||| || |||||    
T  9533 tttggatatgatagagagaagtaagagagagtgcactt-aacattttgagaggtttgcctat----------gggtaaaaaaatatttataccagataac 9621  T
Q  221 atattctatagccctccgtgtattttagggtgaggaatgaaattattcta 270  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  9622 at--tctatagccctccgtgtattttagggtgaggaatgaaattattcta 9669  T

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Target: scaffold0199; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 386
Target Start/End: Original strand, 9667 - 9700
Alignment:
Q  353 ctaccttgtataggtgtccactaatttgtgtctg 386  Q
    |||||||||||||||||||| |||||||||||||    
T  9667 ctaccttgtataggtgtccattaatttgtgtctg 9700  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 3170501 - 3170611
Alignment:
Q  270 aagtaaagctactctcttttt-tgtggttgaaagctaaacatacatgtttttgttattgttatcatgattgatggagacattcgctaccttgtataggtg 368  Q
    ||||||| || |||||||||| |||||||||||||||||||| |||  |||||| ||| |||||| ||||| |||| |||| ||||||||||||| |||     
T  3170501 aagtaaaacttctctctttttgtgtggttgaaagctaaacatgcatccttttgtcattattatcaagattggtggaaacatccgctaccttgtatgggta 3170600  T
Q  369 tccactaattt 379  Q
    |||||| ||||    
T  3170601 tccactgattt 3170611  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 325
Target Start/End: Original strand, 17976664 - 17976719
Alignment:
Q  270 aagtaaagctactctcttttttgtggttgaaagctaaacatacatgtttttgttat 325  Q
    ||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||    
T  17976664 aagtaaagctattctcttttttgtggttgaaagctaaagagacatgcttttgttat 17976719  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 372
Target Start/End: Complemental strand, 4105794 - 4105692
Alignment:
Q  270 aagtaaagctactctcttttttgtggttgaaagctaaacatacatgtttttgttattgttatcatgattgatggagacattcgctaccttgtataggtgt 369  Q
    |||| |||||| | |||||||||||| | |||||||| ||  | | ||||  |||||||||||||||||| |||||| |  |||| |||||||| |||||    
T  4105794 aagtcaagctattatcttttttgtggcttaaagctaatcaagcttcttttcattattgttatcatgattggtggagatacccgctgccttgtatgggtgt 4105695  T
Q  370 cca 372  Q
    |||    
T  4105694 cca 4105692  T

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