View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2272_high_4 (Length: 841)
Name: NF2272_high_4
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 740; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 18 - 824
Target Start/End: Original strand, 40221796 - 40222603
Alignment:
| Q |
18 |
agtaacgccttcaagttattattttttagtagctcatgaatttcatcgtaaccagcggcaagtctataattcaaatcccccaaccaaataatgttactgc |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40221796 |
agtaacgccttcaagttattgttttttagtagctcatgaatttcatcgtaaccagcggcaagtctataattcaaatcccccaaccaaataatgttactgc |
40221895 |
T |
|
| Q |
118 |
acatataccaaattaattaagagtgtgtagatattaaataattagaaatttggaatcattattcataggacttactcatgttctagtataccaagtgagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40221896 |
acatataccaaattaattaagagtgtgtagatattaaataattagaaatttggaatcattattcataggacttactcatgttctagtataccaagtgagt |
40221995 |
T |
|
| Q |
218 |
gagaaaatttagttctcttgatgatttccgcgatgtccaagtttcgacgcaactcgtcaccacatttctctccagaggccaagtgagtgcaaacgaagca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40221996 |
gagaaaatttagttctcttgatgatttccgcgatgtccaagtttcgacgcaactcgtcaccacatttctctccagaggccaagtgagtgcaaacgaagca |
40222095 |
T |
|
| Q |
318 |
gaatgtggtatggtacaatctcatgctaatagatatcgaaccctgttagcataaaacacaaatttataaaaatgtaagcaatgaatcataatcataccac |
417 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40222096 |
gaatgtggtttggtacaatctcatgctaatagatatcgaaccctgttagcataaaccacaaatttacaaaaatgtaagcaatgaatcataatcataccac |
40222195 |
T |
|
| Q |
418 |
tgtatccagtacatagtcctacttcatcttgaaatctcacatttccatagcaaaatctgaagcaacagctaattaattagaaccattttatag-ccccct |
516 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
40222196 |
tgtagccagtacatagtcctacttcatcttgaaatgtcacatttccatagcaaaatctgaagcaatagctaattaattagaaccattttatagcccccct |
40222295 |
T |
|
| Q |
517 |
catatataattgtactggacatgcgcatattgaaccacatatatgacatcaacgtgtaatttattttatactatcaatcaatcataatcgtcagatcatt |
616 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40222296 |
catatataattgtacataacacgcgcatattgaaccacatatatgacatcaacgtgtaatttcttttatactatcaatcaatcataatcgtcagatcatt |
40222395 |
T |
|
| Q |
617 |
tgacttttaacgaaccttatttccaaggtagcccatgatgccggtaccaacgcgagacacttttaaattgccaacgtggttgcgataatcggcgcgtacc |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40222396 |
tgacttttaacgaaccttatttccaaggtagcccatgatgccggtaccaacgcgagacacttttaaattgccaacgtggttgcgataatcggcgcgtacc |
40222495 |
T |
|
| Q |
717 |
cacacgcacaagaagataccaaccatttgcttgcttgctactagactaaagcgttgcttttgatttgggatttcattgtttgaggtgtttagagcttgat |
816 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40222496 |
cacacgcacaagaagataccgaccatttgcttgcttgctactaggctaaagcgtttcttttgatttgggatttcattgtttgaggtgtttagagcttgat |
40222595 |
T |
|
| Q |
817 |
gaataagg |
824 |
Q |
| |
|
|||||||| |
|
|
| T |
40222596 |
gaataagg |
40222603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 616
Target Start/End: Complemental strand, 39338417 - 39338380
Alignment:
| Q |
579 |
attttatactatcaatcaatcataatcgtcagatcatt |
616 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
39338417 |
attttatactatcaatcaattataatcgtcaaatcatt |
39338380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 574 - 616
Target Start/End: Complemental strand, 4076111 - 4076069
Alignment:
| Q |
574 |
aatttattttatactatcaatcaatcataatcgtcagatcatt |
616 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
4076111 |
aattttttttacactatcaatcaatcataatcgttagatcatt |
4076069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 578 - 616
Target Start/End: Original strand, 36886013 - 36886051
Alignment:
| Q |
578 |
tattttatactatcaatcaatcataatcgtcagatcatt |
616 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
36886013 |
tattttacactatcaatcaatcataatcgtcaggtcatt |
36886051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University