View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_41 (Length: 396)
Name: NF2272_high_41
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 30 - 378
Target Start/End: Complemental strand, 39028494 - 39028150
Alignment:
| Q |
30 |
tataataagttcaagaaaccaagatcaacaatatttcaattataaagtgcaatgcatgaaaactaatcaacaattacaactagaatatcaaaatcatgct |
129 |
Q |
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| T |
39028494 |
tataataagttcaagaaaacaagatcaacaatatttcaattataaagagaaatgcatgaaaactaatcaacaattacaactagaatatcaaaatcatgct |
39028395 |
T |
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| Q |
130 |
tnnnnnnntaatctacaattaataatgaagtactccaaaattatgtcatgtgggcatagcaagtttattagcaaaattaagcatatgtatagataaaaat |
229 |
Q |
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| T |
39028394 |
taaaaaaataatctacaat----aatgaagtactccaaaattatgtcatgtgggcattgcaagtttattagcaaaattaagcatatgtatagataaaaat |
39028299 |
T |
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| Q |
230 |
atactattagaaaaattgaattatgcaagaactttagaagnnnnnnnnttgttttaaatttcaacctattcctacatgttttaatttttatctgtagata |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
39028298 |
atactattagaaaaattgaattatgcaagaactttagaagaaaaaaaattgttttaaatttcatcctattcctacatgttttaatttttatctatagata |
39028199 |
T |
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| Q |
330 |
tagaagtgtttgataattaccttttgactctctttggatcagtaattct |
378 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39028198 |
tagaagtgttagataattaccttttgactctctttggatcagtaattct |
39028150 |
T |
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