View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2272_high_42 (Length: 393)

Name: NF2272_high_42
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2272_high_42
NF2272_high_42
[»] chr3 (4 HSPs)
chr3 (1-324)||(40362256-40362579)
chr3 (316-377)||(40362767-40362828)
chr3 (90-132)||(36038598-36038640)
chr3 (90-145)||(1590412-1590467)
[»] chr7 (2 HSPs)
chr7 (85-145)||(26881636-26881696)
chr7 (82-142)||(3660455-3660515)
[»] chr5 (3 HSPs)
chr5 (82-130)||(40438609-40438657)
chr5 (76-139)||(40918950-40919013)
chr5 (85-121)||(18293839-18293875)
[»] chr4 (2 HSPs)
chr4 (87-130)||(27048789-27048832)
chr4 (77-131)||(17629421-17629475)
[»] chr2 (2 HSPs)
chr2 (91-142)||(33292973-33293024)
chr2 (76-145)||(35792157-35792226)
[»] chr1 (1 HSPs)
chr1 (84-118)||(16752776-16752810)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 40362256 - 40362579
Alignment:
Q  1 tctctctaacacctacccgtctttatatgtatatagaataagagattaattttcataaaccgacaatgtaaatgttttttaacacatgcattcaatcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||| |||||||    
T  40362256 tctctctaacacctacccgtctttatatgtatatagaataagagattaattttcataaaccgacggtgtaaatgttttttagcacatgcatttaatcaaa 40362355  T
Q  101 tcatatcaaatagatatttttagagatattttacgaactaacatatcactgacaagtttaatctctaaaaataacacattagctttagacaatatgttta 200  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40362356 tcatatcaaatagatatttttaaagatattttacaaactaacatatcactgacaagtttaatctctaaaaataacacattagctttagacaatatgttta 40362455  T
Q  201 tttcatttgatttatctttttacttcttttgaactaa-nnnnnnnnnctttgctaaattacacatttaagtttggttcctcctaagtttaattcctaact 299  Q
    |||||||||||||||||||||||||||||||||||||          |||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  40362456 tttcatttgatttatctttttacttcttttgaactaattttttttttctttactaaattacacatttaag-ttggttcctcctaagtttaattcctaact 40362554  T
Q  300 ccttcccagctatatattcattaaa 324  Q
    ||||||| |||||||||||||||||    
T  40362555 ccttccctgctatatattcattaaa 40362579  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 40362767 - 40362828
Alignment:
Q  316 ttcattaaatccataggatgagtggtgagaaaacttgtggaatccaaatttatgtcccatta 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40362767 ttcattaaatccataggatgagtggtgagaaaacttgtggaatccaaatttatgtcccatta 40362828  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 36038598 - 36038640
Alignment:
Q  90 attcaatcaaatcatatcaaatagatatttttagagatatttt 132  Q
    ||||||||||||||| |||||||||||||| ||||||||||||    
T  36038598 attcaatcaaatcatgtcaaatagatatttatagagatatttt 36038640  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 1590467 - 1590412
Alignment:
Q  90 attcaatcaaatcatatcaaatagatatttttagagatattttacgaactaacata 145  Q
    |||||||||||| |||| ||||| ||||||||| |||||||||| ||| |||||||    
T  1590467 attcaatcaaattatataaaataaatatttttaaagatattttaagaattaacata 1590412  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 26881696 - 26881636
Alignment:
Q  85 catgcattcaatcaaatcatatcaaatagatatttttagagatattttacgaactaacata 145  Q
    |||||||||||||||||||  ||| ||| |||||||| |||||||||||| | ||||||||    
T  26881696 catgcattcaatcaaatcacgtcatatatatattttttgagatattttacaagctaacata 26881636  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 3660515 - 3660455
Alignment:
Q  82 acacatgcattcaatcaaatcatatcaaatagatatttttagagatattttacgaactaac 142  Q
    |||||||||| | ||||||||||  ||||| ||||| | ||||||||||||| ||||||||    
T  3660515 acacatgcatcctatcaaatcatgacaaattgatatatgtagagatattttaggaactaac 3660455  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 40438609 - 40438657
Alignment:
Q  82 acacatgcattcaatcaaatcatatcaaatagatatttttagagatatt 130  Q
    |||||||||| |||||||||||| |||||||||||||| |||| |||||    
T  40438609 acacatgcatccaatcaaatcatgtcaaatagatatttgtagaaatatt 40438657  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 40919013 - 40918950
Alignment:
Q  76 tttttaacacatgcattcaatcaaatcatatcaaatagatatttttagagatattttacgaact 139  Q
    ||||| ||||||| || ||||||||| || ||||||| ||| |||||||||||||||| |||||    
T  40919013 ttttttacacatgtatccaatcaaattatgtcaaataaataattttagagatattttaggaact 40918950  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 18293839 - 18293875
Alignment:
Q  85 catgcattcaatcaaatcatatcaaatagatattttt 121  Q
    ||||||||||||||||||||||||  |||||||||||    
T  18293839 catgcattcaatcaaatcatatcacgtagatattttt 18293875  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 130
Target Start/End: Original strand, 27048789 - 27048832
Alignment:
Q  87 tgcattcaatcaaatcatatcaaatagatatttttagagatatt 130  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||    
T  27048789 tgcatccaatcaaatcatatcaagtagatagttttagagatatt 27048832  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 17629421 - 17629475
Alignment:
Q  77 ttttaacacatgcattcaatcaaatcatatcaaatagatatttttagagatattt 131  Q
    |||| |||||||| | |||| ||||||||  ||||||||||||||||||||||||    
T  17629421 tttttacacatgcttccaattaaatcatacaaaatagatatttttagagatattt 17629475  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 33293024 - 33292973
Alignment:
Q  91 ttcaatcaaatcatatcaaatagatatttttagagatattttacgaactaac 142  Q
    |||||||||||| ||| |||||||||||| || |||||||||| ||||||||    
T  33293024 ttcaatcaaatcgtataaaatagatatttgtaaagatattttatgaactaac 33292973  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 35792226 - 35792157
Alignment:
Q  76 tttttaacacatgcattcaatcaaatcatatcaaatagatatttttagagatattttacgaactaacata 145  Q
    ||||| ||| ||||||||||| |||| ||||||| ||||||||  || | |||||||| |||||||||||    
T  35792226 ttttttacaaatgcattcaataaaataatatcaagtagatattcgtacatatattttaagaactaacata 35792157  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 118
Target Start/End: Complemental strand, 16752810 - 16752776
Alignment:
Q  84 acatgcattcaatcaaatcatatcaaatagatatt 118  Q
    ||||||||||||||||||||||| |||||||||||    
T  16752810 acatgcattcaatcaaatcatattaaatagatatt 16752776  T

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