View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2272_high_44 (Length: 382)
Name: NF2272_high_44
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 50738073 - 50738425
Alignment:
| Q |
18 |
tttccatcttcaattcggactcattggaaaatctattttaattcacagttacatttttaatagaagtattgctgttaattggatcagataaactatacac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50738073 |
tttccatcttcaattcggactcattggaaaatctattttaattca--gttacatttttaataaaagtattgctgttaattggatcagataaactatacac |
50738170 |
T |
|
| Q |
118 |
cttgaaacaagtaatcagtccttttggcatattattaatacaggcatgaacgcgaacatagcagatgaatagagtaatagacaactaaaagcatcttgaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50738171 |
cttgaaacaagtaatcagtccttttggcatattattaatacaggcatgaacgcgaacatagcagatgaatagagtaatagacaactaaaagcatcttgaa |
50738270 |
T |
|
| Q |
218 |
aattaccaagactcatctgcattatacaatataatatatctgaacaatgcagcaaagctgaaagacaaactatacaaccttgatatataatgcagtcccg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50738271 |
aattaccaagactcatctgcattatacaatataatatatctgaacaatgcagcaaagctgaaagacaaactatacaaccttgatatataatgcagtcccg |
50738370 |
T |
|
| Q |
318 |
aatgcaattctcttccattttcaataagcaaaaaattctccaaaatgaatctctg |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50738371 |
aatgcaattctcttccattttcaataagcaaaaaattctccaaaatgaatctctg |
50738425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University