View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2272_high_47 (Length: 369)

Name: NF2272_high_47
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2272_high_47
NF2272_high_47
[»] chr3 (7 HSPs)
chr3 (1-248)||(36588038-36588286)
chr3 (255-301)||(37138242-37138288)
chr3 (269-303)||(31762204-31762238)
chr3 (255-301)||(46886841-46886886)
chr3 (268-301)||(27896339-27896372)
chr3 (255-307)||(36587866-36587918)
chr3 (255-295)||(55113550-55113590)
[»] chr8 (10 HSPs)
chr8 (255-293)||(44426531-44426569)
chr8 (265-305)||(31118862-31118902)
chr8 (255-294)||(2840246-2840285)
chr8 (255-294)||(2844933-2844972)
chr8 (255-301)||(37353392-37353438)
chr8 (254-291)||(24558742-24558779)
chr8 (268-301)||(31751713-31751746)
chr8 (267-307)||(1112736-1112776)
chr8 (255-303)||(8499085-8499133)
chr8 (265-309)||(32976302-32976346)
[»] chr1 (7 HSPs)
chr1 (255-301)||(4920894-4920940)
chr1 (265-301)||(48064189-48064225)
chr1 (255-301)||(34619506-34619552)
chr1 (266-303)||(11218100-11218137)
chr1 (255-307)||(27820484-27820535)
chr1 (270-302)||(35925584-35925616)
chr1 (267-307)||(38219819-38219859)
[»] chr5 (10 HSPs)
chr5 (255-307)||(10772022-10772074)
chr5 (267-298)||(8089021-8089052)
chr5 (270-309)||(11715018-11715057)
chr5 (263-298)||(17657744-17657779)
chr5 (265-306)||(6593175-6593216)
chr5 (266-295)||(11706742-11706771)
chr5 (257-306)||(40731169-40731218)
chr5 (269-301)||(5559610-5559642)
chr5 (265-301)||(29845051-29845087)
chr5 (265-301)||(30291141-30291177)
[»] chr4 (7 HSPs)
chr4 (265-301)||(54214895-54214931)
chr4 (255-304)||(17823016-17823065)
chr4 (265-310)||(50298402-50298447)
chr4 (267-311)||(6466186-6466230)
chr4 (269-301)||(19039661-19039693)
chr4 (255-311)||(30066910-30066966)
chr4 (265-293)||(43824189-43824217)
[»] chr7 (7 HSPs)
chr7 (255-301)||(31002946-31002992)
chr7 (265-295)||(32156895-32156925)
chr7 (252-301)||(425962-426011)
chr7 (265-294)||(7612346-7612375)
chr7 (267-304)||(46945772-46945809)
chr7 (280-312)||(24909527-24909559)
chr7 (265-301)||(25595986-25596022)
[»] chr2 (3 HSPs)
chr2 (265-307)||(9833029-9833071)
chr2 (265-301)||(28039470-28039506)
chr2 (265-301)||(40158644-40158680)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 36588286 - 36588038
Alignment:
Q  1 tagggaatgctaaaaagaagaaggaaaagaaaggttggttggatatttgggagtatgattatgagagttttgtggatgtgtcgaaaagagtaatgttgcg 100  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  36588286 tagggaatgctaaaaagaagaaggaaaagaagggtttgttggatgtttgggagtatgattatgagagttttgttgatgtgtccaaaagagtaatgttgcg 36588187  T
Q  101 tcggtctcgtttgcagcaacaacaagttgttcgtgaagttcttctttctatgcttcctccaggtgcgcctgctcaggtggattattatagaacttttac- 199  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||     
T  36588186 tcggtctcgtttgcagcaacagcaagttgttcgtgaggttcttctttctatgcttcctccaggtgcgcctgctcaggtgga-tattatagaatttttact 36588088  T
Q  200 -tcttttatgtttctttcaaggattattgtattatctgctggtactactt 248  Q
     |||||||||||||||||||||||||||| ||||||| |||||| |||||    
T  36588087 ttcttttatgtttctttcaaggattattgaattatctactggtattactt 36588038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 37138288 - 37138242
Alignment:
Q  255 ataagcactgatgctataagctgcaaattaagttgtttatcaaaaca 301  Q
    ||||||||| |||||||||||| |||||||||||||||||| |||||    
T  37138288 ataagcacttatgctataagcttcaaattaagttgtttatccaaaca 37138242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 31762238 - 31762204
Alignment:
Q  269 tataagctgcaaattaagttgtttatcaaaacaag 303  Q
    ||||||||||||||||||||||||||| |||||||    
T  31762238 tataagctgcaaattaagttgtttatccaaacaag 31762204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 46886841 - 46886886
Alignment:
Q  255 ataagcactgatgctataagctgcaaattaagttgtttatcaaaaca 301  Q
    ||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  46886841 ataagcacttatgctataagctgcaaa-taagttgtttatccaaaca 46886886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 301
Target Start/End: Original strand, 27896339 - 27896372
Alignment:
Q  268 ctataagctgcaaattaagttgtttatcaaaaca 301  Q
    ||||||||||||||||||| ||||||||||||||    
T  27896339 ctataagctgcaaattaagctgtttatcaaaaca 27896372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 36587918 - 36587866
Alignment:
Q  255 ataagcactgatgctataagctgcaaattaagttgtttatcaaaacaaggtct 307  Q
    |||||| || ||||||||||||| ||||||| ||||||||| ||||| |||||    
T  36587918 ataagcgcttatgctataagctgtaaattaaattgtttatcgaaacagggtct 36587866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 55113590 - 55113550
Alignment:
Q  255 ataagcactgatgctataagctgcaaattaagttgtttatc 295  Q
    |||| |||| |||||||||||||||||||||||||| ||||    
T  55113590 ataaacacttatgctataagctgcaaattaagttgtgtatc 55113550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 293
Target Start/End: Original strand, 44426531 - 44426569
Alignment:
Q  255 ataagcactgatgctataagctgcaaattaagttgttta 293  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  44426531 ataagcacttatgctataagctgcaaattaagttgttta 44426569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 31118862 - 31118902
Alignment:
Q  265 atgctataagctgcaaattaagttgtttatcaaaacaaggt 305  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  31118862 atgctataagctgcacattaagttgtttatccaaacaaggt 31118902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 2840285 - 2840246
Alignment:
Q  255 ataagcactgatgctataagctgcaaattaagttgtttat 294  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  2840285 ataagcacttatgctataagctgcaaaataagttgtttat 2840246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 2844972 - 2844933
Alignment:
Q  255 ataagcactgatgctataagctgcaaattaagttgtttat 294  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  2844972 ataagcacttatgctataagctgcaaaataagttgtttat 2844933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 37353392 - 37353438
Alignment:
Q  255 ataagcactgatgctataagctgcaaattaagttgtttatcaaaaca 301  Q
    ||||||| | |||||||||||||||||| |||||||||||| |||||    
T  37353392 ataagcatttatgctataagctgcaaatcaagttgtttatccaaaca 37353438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 24558779 - 24558742
Alignment:
Q  254 aataagcactgatgctataagctgcaaattaagttgtt 291  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  24558779 aataaacacttatgctataagctgcaaattaagttgtt 24558742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 301
Target Start/End: Original strand, 31751713 - 31751746
Alignment:
Q  268 ctataagctgcaaattaagttgtttatcaaaaca 301  Q
    |||||||||||||||||||||||||||| |||||    
T  31751713 ctataagctgcaaattaagttgtttatccaaaca 31751746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 1112776 - 1112736
Alignment:
Q  267 gctataagctgcaaattaagttgtttatcaaaacaaggtct 307  Q
    |||||||||||||||||||||||||| || ||||| |||||    
T  1112776 gctataagctgcaaattaagttgtttttctaaacagggtct 1112736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 8499133 - 8499085
Alignment:
Q  255 ataagcactgatgctataagctgcaaattaagttgtttatcaaaacaag 303  Q
    |||||| || || ||||||| |||||||||||||||||||| |||||||    
T  8499133 ataagcgcttatactataagttgcaaattaagttgtttatccaaacaag 8499085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 32976346 - 32976302
Alignment:
Q  265 atgctataagctgcaaattaagttgtttatcaaaacaaggtctta 309  Q
    ||||||||||||||| |||||| |||||||| ||||| |||||||    
T  32976346 atgctataagctgcatattaaggtgtttatccaaacatggtctta 32976302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 4920894 - 4920940
Alignment:
Q  255 ataagcactgatgctataagctgcaaattaagttgtttatcaaaaca 301  Q
    ||||||||| |||||||||||||||||||||| |||||||| |||||    
T  4920894 ataagcacttatgctataagctgcaaattaagctgtttatccaaaca 4920940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 48064225 - 48064189
Alignment:
Q  265 atgctataagctgcaaattaagttgtttatcaaaaca 301  Q
    ||||||||||||||||||||||||||||||| |||||    
T  48064225 atgctataagctgcaaattaagttgtttatccaaaca 48064189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 34619506 - 34619552
Alignment:
Q  255 ataagcactgatgctataagctgcaaattaagttgtttatcaaaaca 301  Q
    ||||||| | |||||||||||||||||||||| |||||||| |||||    
T  34619506 ataagcaattatgctataagctgcaaattaagctgtttatccaaaca 34619552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 11218100 - 11218137
Alignment:
Q  266 tgctataagctgcaaattaagttgtttatcaaaacaag 303  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  11218100 tgctataagctgcaaattatgttgtttatccaaacaag 11218137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 27820484 - 27820535
Alignment:
Q  255 ataagcactgatgctataagctgcaaattaagttgtttatcaaaacaaggtct 307  Q
    |||||| || ||||||||||||||||| ||||||||||||| ||||| |||||    
T  27820484 ataagcgcttatgctataagctgcaaa-taagttgtttatccaaacagggtct 27820535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 35925616 - 35925584
Alignment:
Q  270 ataagctgcaaattaagttgtttatcaaaacaa 302  Q
    |||||||||||||||||||||||||| ||||||    
T  35925616 ataagctgcaaattaagttgtttatccaaacaa 35925584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 38219859 - 38219819
Alignment:
Q  267 gctataagctgcaaattaagttgtttatcaaaacaaggtct 307  Q
    |||||||||||||||||||| |||||||| ||||| |||||    
T  38219859 gctataagctgcaaattaagatgtttatccaaacagggtct 38219819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 10772022 - 10772074
Alignment:
Q  255 ataagcactgatgctataagctgcaaattaagttgtttatcaaaacaaggtct 307  Q
    ||||||||| |||||||||||||||||||||||||| |||  ||||| |||||    
T  10772022 ataagcacttatgctataagctgcaaattaagttgtatattcaaacatggtct 10772074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 298
Target Start/End: Complemental strand, 8089052 - 8089021
Alignment:
Q  267 gctataagctgcaaattaagttgtttatcaaa 298  Q
    ||||||||||||||||||||||||||||||||    
T  8089052 gctataagctgcaaattaagttgtttatcaaa 8089021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 11715018 - 11715057
Alignment:
Q  270 ataagctgcaaattaagttgtttatcaaaacaaggtctta 309  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  11715018 ataagctgcaaattaagttgtttatccaaacagggtctta 11715057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 298
Target Start/End: Complemental strand, 17657779 - 17657744
Alignment:
Q  263 tgatgctataagctgcaaattaagttgtttatcaaa 298  Q
    |||||||||||||| |||||||||||||||||||||    
T  17657779 tgatgctataagctacaaattaagttgtttatcaaa 17657744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 6593216 - 6593175
Alignment:
Q  265 atgctataagctgcaaattaagttgtttatcaaaacaaggtc 306  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||    
T  6593216 atgctataagctgtaaattaagttgtttatccaaacagggtc 6593175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Complemental strand, 11706771 - 11706742
Alignment:
Q  266 tgctataagctgcaaattaagttgtttatc 295  Q
    ||||||||||||||||||||||||||||||    
T  11706771 tgctataagctgcaaattaagttgtttatc 11706742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 40731218 - 40731169
Alignment:
Q  257 aagcactgatgctataagctgcaaattaagttgtttatcaaaacaaggtc 306  Q
    ||||||| ||||||||||||||||| ||| ||||||||| ||||| ||||    
T  40731218 aagcacttatgctataagctgcaaaataatttgtttatccaaacatggtc 40731169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 5559642 - 5559610
Alignment:
Q  269 tataagctgcaaattaagttgtttatcaaaaca 301  Q
    ||||||||||||||||||||||||||| |||||    
T  5559642 tataagctgcaaattaagttgtttatccaaaca 5559610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 29845051 - 29845087
Alignment:
Q  265 atgctataagctgcaaattaagttgtttatcaaaaca 301  Q
    |||||||||| |||||||||||||||||||| |||||    
T  29845051 atgctataagttgcaaattaagttgtttatccaaaca 29845087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 30291177 - 30291141
Alignment:
Q  265 atgctataagctgcaaattaagttgtttatcaaaaca 301  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  30291177 atgctataagctgcaaattaagttggttatccaaaca 30291141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 54214931 - 54214895
Alignment:
Q  265 atgctataagctgcaaattaagttgtttatcaaaaca 301  Q
    ||||||||||||||||||||||||||||||| |||||    
T  54214931 atgctataagctgcaaattaagttgtttatccaaaca 54214895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 17823065 - 17823016
Alignment:
Q  255 ataagcactgatgctataagctgcaaattaagttgtttatcaaaacaagg 304  Q
    |||||| || ||||||| |||||||||||||| |||||||| ||||||||    
T  17823065 ataagcccttatgctatgagctgcaaattaagctgtttatccaaacaagg 17823016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 50298447 - 50298402
Alignment:
Q  265 atgctataagctgcaaattaagttgtttatcaaaacaaggtcttag 310  Q
    |||||||||||| |||||||||||||||||| ||||| || |||||    
T  50298447 atgctataagcttcaaattaagttgtttatccaaacatggccttag 50298402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 6466186 - 6466230
Alignment:
Q  267 gctataagctgcaaattaagttgtttatcaaaacaaggtcttagt 311  Q
    |||||||||||||||  |||||||||||| ||||||| |||||||    
T  6466186 gctataagctgcaaaagaagttgtttatccaaacaagatcttagt 6466230  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 19039693 - 19039661
Alignment:
Q  269 tataagctgcaaattaagttgtttatcaaaaca 301  Q
    ||||||||||||||||||||||||||| |||||    
T  19039693 tataagctgcaaattaagttgtttatccaaaca 19039661  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 30066910 - 30066966
Alignment:
Q  255 ataagcactgatgctataagctgcaaattaagttgtttatcaaaacaaggtcttagt 311  Q
    |||||| || ||||||||||||||||||||| ||||||||  ||||| ||| |||||    
T  30066910 ataagcgcttatgctataagctgcaaattaaattgtttatgcaaacagggttttagt 30066966  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 43824217 - 43824189
Alignment:
Q  265 atgctataagctgcaaattaagttgttta 293  Q
    |||||||||||||||||||||||||||||    
T  43824217 atgctataagctgcaaattaagttgttta 43824189  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 31002946 - 31002992
Alignment:
Q  255 ataagcactgatgctataagctgcaaattaagttgtttatcaaaaca 301  Q
    |||||| || |||||||||| |||||||||||||||||||| |||||    
T  31002946 ataagcgcttatgctataagatgcaaattaagttgtttatccaaaca 31002992  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 295
Target Start/End: Complemental strand, 32156925 - 32156895
Alignment:
Q  265 atgctataagctgcaaattaagttgtttatc 295  Q
    |||||||||||||||||||||||||||||||    
T  32156925 atgctataagctgcaaattaagttgtttatc 32156895  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 425962 - 426011
Alignment:
Q  252 acaataagcactgatgctataagctgcaaattaagttgtttatcaaaaca 301  Q
    ||||||||| || ||||||||||||||||| |||||| |||||| |||||    
T  425962 acaataagcgcttatgctataagctgcaaaataagttatttatccaaaca 426011  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 294
Target Start/End: Complemental strand, 7612375 - 7612346
Alignment:
Q  265 atgctataagctgcaaattaagttgtttat 294  Q
    ||||||||||||||||||||||||||||||    
T  7612375 atgctataagctgcaaattaagttgtttat 7612346  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 46945809 - 46945772
Alignment:
Q  267 gctataagctgcaaattaagttgtttatcaaaacaagg 304  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  46945809 gctataagctgcaaactaagttgtttatccaaacaagg 46945772  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 312
Target Start/End: Complemental strand, 24909559 - 24909527
Alignment:
Q  280 aattaagttgtttatcaaaacaaggtcttagta 312  Q
    |||||||||||||||||||||||||| ||||||    
T  24909559 aattaagttgtttatcaaaacaaggttttagta 24909527  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 25596022 - 25595986
Alignment:
Q  265 atgctataagctgcaaattaagttgtttatcaaaaca 301  Q
    |||||||||||||||| |||||||||||||| |||||    
T  25596022 atgctataagctgcaagttaagttgtttatccaaaca 25595986  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 9833071 - 9833029
Alignment:
Q  265 atgctataagctgcaaattaagttgtttatcaaaacaaggtct 307  Q
    ||||||||||||| |||||||||||||||| | ||||||||||    
T  9833071 atgctataagctgtaaattaagttgtttataagaacaaggtct 9833029  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 28039470 - 28039506
Alignment:
Q  265 atgctataagctgcaaattaagttgtttatcaaaaca 301  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  28039470 atgctataaactgcaaattaagttgtttatccaaaca 28039506  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 40158680 - 40158644
Alignment:
Q  265 atgctataagctgcaaattaagttgtttatcaaaaca 301  Q
    |||||||||||| |||||||||||||||||| |||||    
T  40158680 atgctataagctacaaattaagttgtttatccaaaca 40158644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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