View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2272_high_50 (Length: 347)

Name: NF2272_high_50
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2272_high_50
NF2272_high_50
[»] chr4 (2 HSPs)
chr4 (137-331)||(21262862-21263056)
chr4 (16-116)||(21263417-21263517)
[»] scaffold0224 (2 HSPs)
scaffold0224 (237-317)||(11426-11506)
scaffold0224 (137-246)||(11593-11702)
[»] chr1 (2 HSPs)
chr1 (237-317)||(42935265-42935345)
chr1 (137-246)||(42935069-42935178)
[»] chr5 (1 HSPs)
chr5 (26-80)||(4943810-4943864)
[»] chr2 (1 HSPs)
chr2 (242-293)||(23701502-23701552)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 137 - 331
Target Start/End: Complemental strand, 21263056 - 21262862
Alignment:
Q  137 tgcatatttgggcataaactacaaatgataggnnnnnnnggttaaattcctatatgtgcacacagtatatgttaaaaaattataacccatctgttatttc 236  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21263056 tgcatatttgggcataaactacaaatgataggtttttttggttaaattcctatatgtgcacacagtatatgttaaaaaattgtaacccatctgttatttc 21262957  T
Q  237 tatgcttaaagttgattttattcttgaatttttatagatgaccaatgaagacataagagccaaatatgcgaaattgtgtcaaatgatgattgttc 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21262956 tatgcttaaagttgattttattcttgaatttttatagatgaccaatgaagacataagagccaaatatgcaaaattgtgtcaaatgatgattgttc 21262862  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 21263517 - 21263417
Alignment:
Q  16 gtgatggtattgtaaaggttcattacttttctctgttagtcaaaatttgaaatatgttactgttatgnnnnnnnncttccccaaatcaataatgatggtt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||        |||||||||||||||||||||||||    
T  21263517 gtgatggtattgtaaaggttcattacttttctctgttagtcaaaatttgaaatctgctattgttatgttttttttcttccccaaatcaataatgatggtt 21263418  T
Q  116 c 116  Q
    |    
T  21263417 c 21263417  T

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Target: scaffold0224 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 11506 - 11426
Alignment:
Q  237 tatgcttaaagttgattttattcttgaatttttatagatgaccaatgaagacataagagccaaatatgcgaaattgtgtca 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11506 tatgcttaaagttgattttattcttgaatttttatagatgaccaatgaagacataagagccaaatatgcgaaattgtgtca 11426  T

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Target: scaffold0224; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 137 - 246
Target Start/End: Complemental strand, 11702 - 11593
Alignment:
Q  137 tgcatatttgggcataaactacaaatgataggnnnnnnnggttaaattcctatatgtgcacacagtatatgttaaaaaattataacccatctgttatttc 236  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  11702 tgcatatttgggcataaactacaaatgataggtttttttggttaaattcctatatgtgcacacagtatatgttaaaaaattgtaacccatatgttatttc 11603  T
Q  237 tatgcttaaa 246  Q
    |||| |||||    
T  11602 tatgtttaaa 11593  T

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Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 237 - 317
Target Start/End: Original strand, 42935265 - 42935345
Alignment:
Q  237 tatgcttaaagttgattttattcttgaatttttatagatgaccaatgaagacataagagccaaatatgcgaaattgtgtca 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42935265 tatgcttaaagttgattttattcttgaatttttatagatgaccaatgaagacataagagccaaatatgcgaaattgtgtca 42935345  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 137 - 246
Target Start/End: Original strand, 42935069 - 42935178
Alignment:
Q  137 tgcatatttgggcataaactacaaatgataggnnnnnnnggttaaattcctatatgtgcacacagtatatgttaaaaaattataacccatctgttatttc 236  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  42935069 tgcatatttgggcataaactacaaatgataggtttttttggttaaattcctatatgtgcacacagtatatgttaaaaaattgtaacccatatgttatttc 42935168  T
Q  237 tatgcttaaa 246  Q
    |||| |||||    
T  42935169 tatgtttaaa 42935178  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 4943810 - 4943864
Alignment:
Q  26 tgtaaaggttcattacttttctctgttagtcaaaatttgaaatatgttactgtta 80  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  4943810 tgtaaaggttcattacttttctctgttagtcaaaatttgaaatctgctactgtta 4943864  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 23701502 - 23701552
Alignment:
Q  242 ttaaagttgattttattcttgaatttttatagatgaccaatgaagacataag 293  Q
    ||||||||| ||||||||| || ||||||||||||||||| |||||||||||    
T  23701502 ttaaagttggttttattctgga-tttttatagatgaccaacgaagacataag 23701552  T

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