View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_56 (Length: 313)
Name: NF2272_high_56
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_56 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 297
Target Start/End: Original strand, 64136 - 64425
Alignment:
| Q |
5 |
taggcagccgacatagattattgtaatttgtagatatacttataattcttaaccatgcaaacttaattagttgatatttcacaacgtgacaaaagcaaat |
104 |
Q |
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| T |
64136 |
taggcagccgacagagattattgtaatttgtagatatacttat---tcttaaccatgcaaacttaattagttgatatttcacaacgtgacaaaagcaaat |
64232 |
T |
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| Q |
105 |
ccgtaatttgttgctagaagctatatgaatgaacattgatcacattgtcattagtgccgcccaagcatgaatacacacaaagacacactctattggttta |
204 |
Q |
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| T |
64233 |
ccgtaatttattgctagaaactatatgaatgaacattgatcacattgacattagtgccgcccaagcatgaatacacacaaagacacactctattggttta |
64332 |
T |
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| Q |
205 |
tcattttttacactccaaatcagattttcctccatagataaagagtaagaaatcgaatatatggctatctgtttaatagagtaccacatatat |
297 |
Q |
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| T |
64333 |
ttattttttacactccaaatcagattttcctccatagataaagagtaagaaatcgaatatatgactatctgtttaatagaggaccacatatat |
64425 |
T |
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Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 297
Target Start/End: Complemental strand, 40908958 - 40908669
Alignment:
| Q |
5 |
taggcagccgacatagattattgtaatttgtagatatacttataattcttaaccatgcaaacttaattagttgatatttcacaacgtgacaaaagcaaat |
104 |
Q |
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| T |
40908958 |
taggcagccgacagagattattgtaatttgtagatatacttat---tcttaaccatgcaaacttaattagttgatatttcacaacgtgacaaaagcaaat |
40908862 |
T |
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| Q |
105 |
ccgtaatttgttgctagaagctatatgaatgaacattgatcacattgtcattagtgccgcccaagcatgaatacacacaaagacacactctattggttta |
204 |
Q |
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| T |
40908861 |
ccgtaatttattgctagaaactatatgaatgaacattgatcacattgacattagtgccgcccaagcatgaatacacacaaagacacactctattggttta |
40908762 |
T |
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| Q |
205 |
tcattttttacactccaaatcagattttcctccatagataaagagtaagaaatcgaatatatggctatctgtttaatagagtaccacatatat |
297 |
Q |
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| T |
40908761 |
ttattttttacactccaaatcagattttcctccatagataaagagtaagaaatcgaatatatgactatctgtttaatagaggaccacatatat |
40908669 |
T |
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