View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_57 (Length: 311)
Name: NF2272_high_57
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_57 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 228341 - 228057
Alignment:
| Q |
19 |
gcaatgcaagacttgacactaatcatccttattctatgttctgtagtatcaattggtgttggaatcttaaccgaaggttttcctaaaggtatgtatgatg |
118 |
Q |
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| T |
228341 |
gcaatgcaagacttgacactagtcatccttattctatgttctgtagtatcaattggtgttggaatcttaaccgaaggttttcctaaaggtatgtatgatg |
228242 |
T |
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| Q |
119 |
gagttggaatcatactatgtattattttagtggtttttgtcacttcaataagtgactataaacaatctttgcaatttaaggatttggataaagagaagaa |
218 |
Q |
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| T |
228241 |
gagttggaatcatactatgtattattttagtggtttttgtcacttcaataagtgactataaacagtctttgcaatttaaggatttggataaagagaagaa |
228142 |
T |
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| Q |
219 |
aaatgtaagcattcatgttacaagagatagtagaagacaaaaggtttcaattcatgatctagtagttggagatatagttcatctc |
303 |
Q |
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| T |
228141 |
aaatgtaagcattcatgttacaagagatagtagaagacaaaaggtttcaattcatgatctagtagttggagatatagttcatctc |
228057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 14589037 - 14589321
Alignment:
| Q |
19 |
gcaatgcaagacttgacactaatcatccttattctatgttctgtagtatcaattggtgttggaatcttaaccgaaggttttcctaaaggtatgtatgatg |
118 |
Q |
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| T |
14589037 |
gcaatgcaagacttgacactagtcatccttattctatgttctgtagtatcaattggtgttggaatcttaaccgaaggttttcctaaaggtatgtatgatg |
14589136 |
T |
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| Q |
119 |
gagttggaatcatactatgtattattttagtggtttttgtcacttcaataagtgactataaacaatctttgcaatttaaggatttggataaagagaagaa |
218 |
Q |
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| T |
14589137 |
gagttggaatcatactatgtattattttagtggtttttgtcacttcaataagtgactataaacagtctttgcaatttaaggatttggataaagagaagaa |
14589236 |
T |
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| Q |
219 |
aaatgtaagcattcatgttacaagagatagtagaagacaaaaggtttcaattcatgatctagtagttggagatatagttcatctc |
303 |
Q |
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| T |
14589237 |
aaatgtaagcattcatgttacaagagatagtagaagacaaaaggtttcaattcatgatctagtagttggagatatagttcatctc |
14589321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 300
Target Start/End: Original strand, 1624297 - 1624428
Alignment:
| Q |
169 |
agtgactataaacaatctttgcaatttaaggatttggataaagagaagaaaaatgtaagcattcatgttacaagagatagtagaagacaaaaggtttcaa |
268 |
Q |
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| T |
1624297 |
agtgactatcagcaatctctgcaattcttagatttggacaaagagaagaaaaagatttctatacatgttaccagggatggtaaaagacagaaggtttcaa |
1624396 |
T |
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| Q |
269 |
ttcatgatctagtagttggagatatagttcat |
300 |
Q |
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| T |
1624397 |
tttatgacttggtagttggagatatagttcat |
1624428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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