View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2272_high_6 (Length: 769)
Name: NF2272_high_6
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_6 |
 | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 63290 - 63668
Alignment:
| Q |
1 |
ctagtgggatgacacgtgtaataaccccattgaataatggaatatgatcagggagggttaccaccgtagcacaaggcattaataga-------gctatgt |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
63290 |
ctagtgggatgacacgtgtaataaccccattgaataaaggaatatgatcagggagggttaccaccgtagcacaaggcattaatagatctatcagctatgt |
63389 |
T |
|
| Q |
94 |
tatg----------gggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtcgtgttctttttctat |
183 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63390 |
tatggtatggtatggggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtcgtgttctttttctat |
63489 |
T |
|
| Q |
184 |
cctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaacactcctttccaaacaactttcgcacctcttatctttgtctaa |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63490 |
cctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaacactcctttccaaacaactttcgcacctcttatctttgtctaa |
63589 |
T |
|
| Q |
284 |
acatttttcagaaaaaggaaaac-aagaatacactcaccctagggatttgtgactgatcacaatattgctatgctacct |
361 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
63590 |
acatttttcagaaaaaggaaaacaaagaatacactccccctagggatttgtgactgatcacaatatggctatgctacct |
63668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 409 - 746
Target Start/End: Original strand, 63716 - 64054
Alignment:
| Q |
409 |
cgtattcggtggagaagagaagactgctttccatttcatccatcaactagttgatgcatgatcctatatctatatctagacatgaaaaggcaaagccacg |
508 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63716 |
cgtattcggtggagaagagaagactactttccatttcatccatcaacttgttgatgcatgatcctatatctatatctagacatgaaaaggcaaagccacg |
63815 |
T |
|
| Q |
509 |
agttttgtcatctatatacctagcaaatagatccaaaataaaccaattcaatgttaatgtnnnnnnnnnnnnnnnnnnttgacataacaattcatgccaa |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
63816 |
agttttgtcatctatatacctagcaaatagatccaaaataaaccaattcaatgttaatgtaaaaaatgaaggaaaaaattgacataacaattcatgctta |
63915 |
T |
|
| Q |
609 |
aaaccctaaacatcatgtcaactcaagtgggttaatattcatattacttaaatagactt-aagaagtttttcgatgcaatttggacacttttaactaaat |
707 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63916 |
aaaccctaaacatcagatcaactcaagtgggttaatattcatattacttaaatagacttaaagaagtttttcgatgcaatttggacacttttaactaaat |
64015 |
T |
|
| Q |
708 |
agatttctaaaaaatcttaaatgacttctattttaattt |
746 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
64016 |
agatttctaaaaaaccttagatgacttctattttaattt |
64054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 40909804 - 40909426
Alignment:
| Q |
1 |
ctagtgggatgacacgtgtaataaccccattgaataatggaatatgatcagggagggttaccaccgtagcacaaggcattaataga-------gctatgt |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40909804 |
ctagtgggatgacacgtgtaataaccccattgaataaaggaatatgatcagggagggttaccaccgtagcacaaggcattaatagatctatcagctatgt |
40909705 |
T |
|
| Q |
94 |
tatgg----------ggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtcgtgttctttttctat |
183 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40909704 |
tatggtatggtatggggacctaaaaatgtcaaagtcaagccaatgacaatgaatacaaagtattgcatatgtagcagtctttgtcgtgttctttttctat |
40909605 |
T |
|
| Q |
184 |
cctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaacactcctttccaaacaactttcgcacctcttatctttgtctaa |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40909604 |
cctatccaacaaacgaccatgttccttcgtttgttggtaaaagatgccaagcacaaacactcctttccaaacaactttcgcacctcttatctttgtctaa |
40909505 |
T |
|
| Q |
284 |
acatttttcagaaaaaggaaaac-aagaatacactcaccctagggatttgtgactgatcacaatattgctatgctacct |
361 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40909504 |
acatttttcagaaaaaggaaaacaaagaatacactccccctagggatttgtgactgatcacaatatggctatgctacct |
40909426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 409 - 746
Target Start/End: Complemental strand, 40909378 - 40909040
Alignment:
| Q |
409 |
cgtattcggtggagaagagaagactgctttccatttcatccatcaactagttgatgcatgatcctatatctatatctagacatgaaaaggcaaagccacg |
508 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40909378 |
cgtattcggtggagaagagaagactactttccatttcatccatcaacttgttgatgcatgatcctatatctatatctagacatgaaaaggcaaagccacg |
40909279 |
T |
|
| Q |
509 |
agttttgtcatctatatacctagcaaatagatccaaaataaaccaattcaatgttaatgtnnnnnnnnnnnnnnnnnnttgacataacaattcatgccaa |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
40909278 |
agttttgtcatctatatacctagcaaatagatccaaaataaaccaattcaatgttaatgtaaaaaatgaaggaaaaaattgacataacaattcatgctta |
40909179 |
T |
|
| Q |
609 |
aaaccctaaacatcatgtcaactcaagtgggttaatattcatattacttaaatagactt-aagaagtttttcgatgcaatttggacacttttaactaaat |
707 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40909178 |
aaaccctaaacatcagatcaactcaagtgggttaatattcatattacttaaatagacttaaagaagtttttcgatgcaatttggacacttttaactaaat |
40909079 |
T |
|
| Q |
708 |
agatttctaaaaaatcttaaatgacttctattttaattt |
746 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
40909078 |
agatttctaaaaaaccttagatgacttctattttaattt |
40909040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University