View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_61 (Length: 303)
Name: NF2272_high_61
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_61 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 71 - 287
Target Start/End: Complemental strand, 26880182 - 26879966
Alignment:
| Q |
71 |
cttgtacatattatacaatttacgctgggtttatttaaaggaatgaaccgctgtgtaggagtaggaagaaaagacactgagcgataagatgatactacac |
170 |
Q |
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| T |
26880182 |
cttgtacatattatacaatttacgctgggtttatttaaaggaatgaaccgctgtgtaggagcaggaagaaaagacactgagcgataagatgatactacac |
26880083 |
T |
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| Q |
171 |
acatgcattgtcacgcacatttgaaaccgcctttgaaattttgttatttattgttttactggtatattttaaatcacattcaaatgtcaggttttatctt |
270 |
Q |
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| T |
26880082 |
acatgcattgtcacgcacatttgaaaccgcctttgaaattttgttatttattgttttactggtatattttaaatcacattcaaatgtcaagttttatctt |
26879983 |
T |
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| Q |
271 |
cgtacttactagatctt |
287 |
Q |
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| T |
26879982 |
cgtacttactagatctt |
26879966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 26880320 - 26880280
Alignment:
| Q |
35 |
cagagatagatgttgatggagttatctggaatgtgacttgt |
75 |
Q |
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| T |
26880320 |
cagagatagatgttgatggagttatctggaatgtgacttgt |
26880280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 40249859 - 40249819
Alignment:
| Q |
35 |
cagagatagatgttgatggagttatctggaatgtgacttgt |
75 |
Q |
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| T |
40249859 |
cagagatagatgttgatggaagtatctggaatgtgacttgt |
40249819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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