View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_67 (Length: 273)
Name: NF2272_high_67
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_67 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 47650234 - 47650480
Alignment:
| Q |
17 |
agaaatatcgtatatgtttacgtataaaattaaattacctatatttatatagtaaatctaatacaaacataccttgaattcaggacttgaaaaataatct |
116 |
Q |
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| T |
47650234 |
agaaatatagtatatgtttacgtataaaattaaattacctatatttatatagtaaatctaatacaaacataccttgaattcaggacttgaaaaataatct |
47650333 |
T |
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| Q |
117 |
accaagtacttccaatcttcgtcacttaaatcatctggtttatgttccaaggctatctcatttgtcttgtattggctaaagtgtttacgaaatctacatc |
216 |
Q |
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| T |
47650334 |
accaagtacttccaatcttcgtcacttaaatcatctggtttatgttccaaggctatctcatttgtcttgtattggctaaagtgtttacgaaatctacatc |
47650433 |
T |
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| Q |
217 |
tatgatttcgatatagtcttttagcaatatcaataataacatctctg |
263 |
Q |
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| T |
47650434 |
tatgatttcgatatagtcttttagcagtatcaataataacatctctg |
47650480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 170641 - 170397
Alignment:
| Q |
19 |
aaatatcgtatatgtttacgtataaaattaaattacctatatttatatagtaaatctaatacaaacataccttgaattcaggacttgaaaaataatctac |
118 |
Q |
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|||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
170641 |
aaatatagtagatgtttacgtatagaattaaattgcctatatttatatagtaaatataatacaaacatacattgaattcaggacttgaaaaataatctac |
170542 |
T |
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| Q |
119 |
caagtacttccaatcttcgtcacttaaatcatctggtttatgttccaaggctatctcatttgtcttgtattggctaaagtgtttacgaaatctacatcta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
170541 |
caagtacttccaatcttcgtcacttaaatcatctggtttatgttccaaagctatctcatttgtcttgtattggctaaagtgtttatgaaatctacatcta |
170442 |
T |
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| Q |
219 |
tgatttcgatatagtcttttagcaatatcaataataacatctctg |
263 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
170441 |
tgatttcgatatagtcttttagcagtatcaataataacatctctg |
170397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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