View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_73 (Length: 260)
Name: NF2272_high_73
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_73 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 38834509 - 38834266
Alignment:
| Q |
1 |
caagttacaccagctatttccacatttgaagtcccgggtccaattgaaatgcaatcatcacctgttcattcaaatcatgttattatattaagctggttgc |
100 |
Q |
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| T |
38834509 |
caagttacaccagctatttccacatttgaagtcccgggtccaattgaaatgcaatcatcacctgttcattcaaatcatgttattatattaagctggttgc |
38834410 |
T |
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| Q |
101 |
ttatataaaaatggtaaaattaagtaaatattggattatatatagccattaccattgcttattaaggagttatatatcccaacatcttttgagttttcaa |
200 |
Q |
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| T |
38834409 |
ttatataaaaatggtaaaattaagtaaatattggattatatatagccattaccattgcttattaaggagttatatatcccaacatcttttgagttttcaa |
38834310 |
T |
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| Q |
201 |
catgtattccatcagtgttggggctaagttttggtgcagaaatg |
244 |
Q |
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| T |
38834309 |
catgtattccatcagtgttggggctaagttttggtgcagaaatg |
38834266 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 244
Target Start/End: Original strand, 12317689 - 12317784
Alignment:
| Q |
149 |
ttaccattgcttattaaggagttatatatcccaacatcttttgagttttcaacatgtattccatcagtgttggggctaagttttggtgcagaaatg |
244 |
Q |
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| T |
12317689 |
ttaccattgcttatcaaggaattatatattccaacatcccttgtgtttcctaagtggattccatcagtattgggactaagtttaggtgcagaaatg |
12317784 |
T |
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