View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2272_high_78 (Length: 250)

Name: NF2272_high_78
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2272_high_78
NF2272_high_78
[»] chr3 (9 HSPs)
chr3 (1-243)||(3459253-3459495)
chr3 (104-200)||(25408775-25408871)
chr3 (11-61)||(3857742-3857792)
chr3 (11-60)||(37537360-37537409)
chr3 (153-186)||(19596276-19596309)
chr3 (6-75)||(23050028-23050097)
chr3 (11-71)||(3694844-3694904)
chr3 (11-59)||(25408683-25408731)
chr3 (14-54)||(53877019-53877059)
[»] chr7 (9 HSPs)
chr7 (104-195)||(42978068-42978159)
chr7 (1-61)||(9490973-9491033)
chr7 (14-72)||(16560012-16560070)
chr7 (14-72)||(16605592-16605650)
chr7 (8-75)||(17116520-17116587)
chr7 (1-59)||(24905200-24905258)
chr7 (2-68)||(26569616-26569682)
chr7 (104-138)||(4997997-4998031)
chr7 (13-71)||(9628120-9628178)
[»] scaffold0047 (1 HSPs)
scaffold0047 (17-211)||(64268-64462)
[»] chr6 (6 HSPs)
chr6 (15-137)||(9907080-9907202)
chr6 (17-75)||(33548678-33548736)
chr6 (14-71)||(11324388-11324445)
chr6 (104-204)||(34714926-34715026)
chr6 (6-59)||(17292898-17292951)
chr6 (11-72)||(29599287-29599348)
[»] chr8 (6 HSPs)
chr8 (104-195)||(8462510-8462601)
chr8 (14-75)||(447765-447826)
chr8 (14-71)||(43776139-43776196)
chr8 (11-66)||(16840219-16840274)
chr8 (158-195)||(33282880-33282917)
chr8 (15-71)||(39435574-39435630)
[»] chr4 (12 HSPs)
chr4 (107-186)||(27270012-27270091)
chr4 (6-188)||(25130445-25130627)
chr4 (14-57)||(45637351-45637394)
chr4 (107-184)||(21204906-21204983)
chr4 (104-219)||(20510404-20510519)
chr4 (1-61)||(32807563-32807623)
chr4 (14-61)||(2610789-2610836)
chr4 (11-57)||(8813918-8813964)
chr4 (13-71)||(13609068-13609126)
chr4 (15-185)||(30972395-30972565)
chr4 (15-57)||(45680373-45680415)
chr4 (14-59)||(13157352-13157397)
[»] chr2 (9 HSPs)
chr2 (1-69)||(12606769-12606837)
chr2 (104-216)||(27009209-27009321)
chr2 (1-61)||(29691021-29691081)
chr2 (15-75)||(35590145-35590205)
chr2 (15-59)||(38332179-38332223)
chr2 (104-138)||(44736029-44736063)
chr2 (14-75)||(129239-129300)
chr2 (11-68)||(9840684-9840741)
chr2 (11-63)||(39117336-39117388)
[»] chr5 (13 HSPs)
chr5 (12-75)||(19315120-19315183)
chr5 (14-75)||(14920896-14920957)
chr5 (14-59)||(32097644-32097689)
chr5 (104-219)||(12863461-12863576)
chr5 (15-59)||(22564223-22564267)
chr5 (1-61)||(32246805-32246865)
chr5 (159-217)||(16610634-16610692)
chr5 (11-60)||(804530-804579)
chr5 (2-54)||(8487959-8488011)
chr5 (159-219)||(12831486-12831546)
chr5 (1-53)||(18908676-18908728)
chr5 (8-60)||(27843382-27843434)
chr5 (159-195)||(32252185-32252221)
[»] chr1 (12 HSPs)
chr1 (14-57)||(2653858-2653901)
chr1 (8-75)||(4889365-4889432)
chr1 (11-75)||(52251259-52251323)
chr1 (155-198)||(16909030-16909073)
chr1 (15-70)||(25529965-25530020)
chr1 (11-57)||(16909171-16909217)
chr1 (104-138)||(34703536-34703570)
chr1 (11-73)||(44675013-44675075)
chr1 (122-188)||(44675124-44675190)
chr1 (104-137)||(6723766-6723799)
chr1 (159-196)||(40708440-40708477)
chr1 (11-75)||(25392439-25392503)
[»] scaffold0027 (1 HSPs)
scaffold0027 (14-75)||(45050-45111)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 3459253 - 3459495
Alignment:
Q  1 catcattcaagttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaatgttacatcaattgtgcaggtcaga 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3459253 catcattcaggttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaatgttacatcaattgtgcaggtcaga 3459352  T
Q  101 gaaaagattaagtccctcactttcatgtggttgaaggctaaagtaacatcactttccctcaattatcatgtttggtggcttagtccgtctaccatcttgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  3459353 gaaaagattaagtccctcactttcatgtggttgaaggctaaagtaacatcactttccctcaattatcatgcttggtggcttagtccgtctaccattttgg 3459452  T
Q  201 acattggttaatagtttttgattgtttcttgtgttctgtgctg 243  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  3459453 acattggttaatagtttttgattgtttcttgtgttctttgctg 3459495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 25408775 - 25408871
Alignment:
Q  104 aagattaagtccctcactttcatgtggttgaaggctaaagtaacatcactttccctcaattatcatgtttggtggcttagtccgtctaccatcttgg 200  Q
    |||||||||||  | || ||| ||||||||||||| ||| | || ||| ||||| |||||||||||| ||||||||||||||| | |||||| ||||    
T  25408775 aagattaagtctataacattcgtgtggttgaaggcgaaattcacttcaatttccttcaattatcatggttggtggcttagtccatttaccatgttgg 25408871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 3857792 - 3857742
Alignment:
Q  11 gttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacagg 61  Q
    |||||||||||||||||  ||||| ||||||||||||||||||| ||||||    
T  3857792 gttatttggtttgcaacactgtgggaaatttggaaagaaagaaataacagg 3857742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 37537409 - 37537360
Alignment:
Q  11 gttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacag 60  Q
    ||||||||||||||||| ||||| ||| | ||||||||||||||||||||    
T  37537409 gttatttggtttgcaacaatgtgaaaattatggaaagaaagaaacaacag 37537360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 186
Target Start/End: Original strand, 19596276 - 19596309
Alignment:
Q  153 tttccctcaattatcatgtttggtggcttagtcc 186  Q
    |||||||||||||||||| |||||||||||||||    
T  19596276 tttccctcaattatcatggttggtggcttagtcc 19596309  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 23050028 - 23050097
Alignment:
Q  6 ttcaagttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaa 75  Q
    |||| ||||| |||||||||||  |||||||||||||||||||| |||| | |||  | |||||||||||    
T  23050028 ttcacgttatctggtttgcaactgtgtggaaaatttggaaagaatgaaatatcagagttttcaatggcaa 23050097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 3694904 - 3694844
Alignment:
Q  11 gttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatg 71  Q
    ||||| ||||||||| |  | ||| |||||||||||||||||||||||||| |||| ||||    
T  3694904 gttatatggtttgcatctgtatgggaaatttggaaagaaagaaacaacagggtatttaatg 3694844  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 25408683 - 25408731
Alignment:
Q  11 gttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaaca 59  Q
    |||||||||||||||||  ||||| |||| |||||||||||||| ||||    
T  25408683 gttatttggtttgcaaccgtgtgggaaatctggaaagaaagaaataaca 25408731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 53877059 - 53877019
Alignment:
Q  14 atttggtttgcaacgatgtggaaaatttggaaagaaagaaa 54  Q
    |||||||||||||| |||||||| |||||||| ||||||||    
T  53877059 atttggtttgcaacaatgtggaagatttggaaggaaagaaa 53877019  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 42978159 - 42978068
Alignment:
Q  104 aagattaagtccctcactttcatgtggttgaaggctaaagtaacatcactttccctcaattatcatgtttggtggcttagtccgtctaccat 195  Q
    |||||||||||||||||||||||||||||||||| ||||||    || |||| |||||||||| ||| |||||||||||||| |||||||||    
T  42978159 aagattaagtccctcactttcatgtggttgaaggttaaagttgattctcttttcctcaattattatggttggtggcttagtctgtctaccat 42978068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9491033 - 9490973
Alignment:
Q  1 catcattcaagttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacagg 61  Q
    |||| |||| |||||||||||||||||  ||||||||||||||||||||||||| ||||||    
T  9491033 catccttcaggttatttggtttgcaacactgtggaaaatttggaaagaaagaaataacagg 9490973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 16560012 - 16560070
Alignment:
Q  14 atttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatgg 72  Q
    ||||||||||| ||| ||||| |||| |||||||||||||| |||||||||||||||||    
T  16560012 atttggtttgctacggtgtgggaaatatggaaagaaagaaataacaggttattcaatgg 16560070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 16605650 - 16605592
Alignment:
Q  14 atttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatgg 72  Q
    ||||||||||| ||| ||||| |||| |||||||||||||| |||||||||||||||||    
T  16605650 atttggtttgctacggtgtgggaaatatggaaagaaagaaataacaggttattcaatgg 16605592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 17116587 - 17116520
Alignment:
Q  8 caagttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaa 75  Q
    ||||||||||||||||| |  || ||  ||||||||||||||||||| |||||||||||||| |||||    
T  17116587 caagttatttggtttgctatcatttgagaaatttggaaagaaagaaataacaggttattcaaaggcaa 17116520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 24905258 - 24905200
Alignment:
Q  1 catcattcaagttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaaca 59  Q
    |||| |||| |||||||||||||||||  ||||| |||||||||||||||| |||||||    
T  24905258 catccttcaggttatttggtttgcaacagtgtgggaaatttggaaagaaaggaacaaca 24905200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 26569616 - 26569682
Alignment:
Q  2 atcattcaagttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattca 68  Q
    ||||||||| | ||||||| |||||| |||||||| || |||||||||||||| || ||||||||||    
T  26569616 atcattcaactgatttggtatgcaactatgtggaatatctggaaagaaagaaataataggttattca 26569682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 4998031 - 4997997
Alignment:
Q  104 aagattaagtccctcactttcatgtggttgaaggc 138  Q
    |||||||||||||||||||| ||||||||||||||    
T  4998031 aagattaagtccctcacttttatgtggttgaaggc 4997997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 9628120 - 9628178
Alignment:
Q  13 tatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatg 71  Q
    |||||||||||||||  ||||| ||||||||||||| ||||| |||||| | |||||||    
T  9628120 tatttggtttgcaacagtgtgggaaatttggaaagagagaaataacagggtcttcaatg 9628178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 64462 - 64268
Alignment:
Q  17 tggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaatgttacatcaattgtgcaggtcagagaaaagattaagtccc 116  Q
    ||||||||||| | |||  ||||||||||||||||||| ||||||||||| |||||||| | ||  ||||||   |||||   ||| || ||||||||||    
T  64462 tggtttgcaactacgtgtgaaatttggaaagaaagaaataacaggttatttaatggcaaggatagttcaattcctcaggtggtagataaaattaagtccc 64363  T
Q  117 tcactttcatgtggttgaaggctaaagtaacatcactttccctcaattatcatgtttggtggcttagtccgtctaccatcttggacattggttaa 211  Q
    || ||||| ||||||||||||  |||    | || |||||| |||||||||||| ||||||||||||||| |  ||||| |||| ||| ||||||    
T  64362 tcgctttcttgtggttgaaggagaaatacccttctctttccttcaattatcatgcttggtggcttagtcctttcaccattttgggcataggttaa 64268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 9907080 - 9907202
Alignment:
Q  15 tttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaatgttacatcaattgtgcaggtcagagaaaagattaagtc 114  Q
    |||||||||||||   |||| ||||||||||||||||||| ||||||||||| |||||||| | ||| || |||   |||||   ||| || ||||||||    
T  9907080 tttggtttgcaacttcgtgggaaatttggaaagaaagaaataacaggttatttaatggcaaggatacctctattcctcaggtggtagataaaattaagtc 9907179  T
Q  115 cctcactttcatgtggttgaagg 137  Q
     ||| ||||||||||||||||||    
T  9907180 gctcgctttcatgtggttgaagg 9907202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 33548736 - 33548678
Alignment:
Q  17 tggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaa 75  Q
    |||| ||| |||||||||||||| || |||||||||||||||||| |||||||||||||    
T  33548736 tggtatgctacgatgtggaaaatatgaaaagaaagaaacaacaggatattcaatggcaa 33548678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 11324388 - 11324445
Alignment:
Q  14 atttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatg 71  Q
    ||||||||||| ||| |||||||||||||||| |||||||| |||||| | |||||||    
T  11324388 atttggtttgctacggtgtggaaaatttggaaggaaagaaataacaggctcttcaatg 11324445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 34714926 - 34715026
Alignment:
Q  104 aagattaagtccctcactttcatgtggttgaaggctaaagtaacatcactttccctcaattatcatgtttggtggcttagtccgtctaccatcttggaca 203  Q
    ||||||||||| |||||||| | ||||||||| || ||| | || || ||| || ||||||| |||| |||||||||||||| || ||||||  ||||||    
T  34714926 aagattaagtctctcacttttaggtggttgaaagcaaaatttacttctcttcccatcaattaccatggttggtggcttagtctgtttaccatactggaca 34715025  T
Q  204 t 204  Q
    |    
T  34715026 t 34715026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 17292951 - 17292898
Alignment:
Q  6 ttcaagttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaaca 59  Q
    |||| |||||||||||||||||  | ||| ||||||||||||||||||| ||||    
T  17292951 ttcaggttatttggtttgcaaccgtatgggaaatttggaaagaaagaaataaca 17292898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 29599348 - 29599287
Alignment:
Q  11 gttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatgg 72  Q
    ||||||||||||||||   ||||| ||||||||||||||||||| || | |||||| |||||    
T  29599348 gttatttggtttgcaagcgtgtgggaaatttggaaagaaagaaataataagttatttaatgg 29599287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 8462601 - 8462510
Alignment:
Q  104 aagattaagtccctcactttcatgtggttgaaggctaaagtaacatcactttccctcaattatcatgtttggtggcttagtccgtctaccat 195  Q
    ||||||||||| ||||| ||||||||||||||||| ||| |  | || ||| || |||||||||||| |||||||||||||| || ||||||    
T  8462601 aagattaagtcactcacattcatgtggttgaaggcgaaatttgcttctcttcccttcaattatcatggttggtggcttagtctgtttaccat 8462510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 447826 - 447765
Alignment:
Q  14 atttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaa 75  Q
    ||||||| ||| ||| ||||| |||| ||||| ||||||||||||||| |||||||||||||    
T  447826 atttggtatgctacggtgtgggaaatatggaaggaaagaaacaacaggatattcaatggcaa 447765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 43776139 - 43776196
Alignment:
Q  14 atttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatg 71  Q
    ||||||||||||||  ||||| ||||||||||||||||||| || ||| |||||||||    
T  43776139 atttggtttgcaacagtgtgggaaatttggaaagaaagaaataataggatattcaatg 43776196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 16840219 - 16840274
Alignment:
Q  11 gttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttatt 66  Q
    ||||| ||||||||||| | |||| ||||||||||||||||||| |||| ||||||    
T  16840219 gttatctggtttgcaactacgtgggaaatttggaaagaaagaaataacaagttatt 16840274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 33282880 - 33282917
Alignment:
Q  158 ctcaattatcatgtttggtggcttagtccgtctaccat 195  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  33282880 ctcaattatcatggttggtggcttagtccgtttaccat 33282917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 39435630 - 39435574
Alignment:
Q  15 tttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatg 71  Q
    ||||||||||||   ||||  ||||||||||||||||||| |||| |||||||||||    
T  39435630 tttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatg 39435574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 27270091 - 27270012
Alignment:
Q  107 attaagtccctcactttcatgtggttgaaggctaaagtaacatcactttccctcaattatcatgtttggtggcttagtcc 186  Q
    ||||||||  |||||||||||||||||||||| ||| |  | |||||| || |||||||||||| |||||||||||||||    
T  27270091 attaagtcaatcactttcatgtggttgaaggcgaaatttccttcacttcccttcaattatcatggttggtggcttagtcc 27270012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 188
Target Start/End: Complemental strand, 25130627 - 25130445
Alignment:
Q  6 ttcaagttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggca-atgttacatcaattgtgcaggtcagagaaa 104  Q
    |||||||||||||||||||||   ||||| |||| ||||||||||| ||||||| ||| || || || | |   | | ||||||||||| ||    || |    
T  25130627 ttcaagttatttggtttgcaatagtgtgggaaatatggaaagaaaggaacaacaagttgtttaagggaacaaaatgc-tcaattgtgcaagtggtcgata 25130529  T
Q  105 agattaagtccctcactttcatgtggttgaaggctaaagtaacatcactttccctcaattatcatgtttggtggcttagtccgt 188  Q
    |||| ||||||||| ||||||||||||||||||  ||| |  |  | ||||||||||| ||||||| |||||||||||||||||    
T  25130528 agatcaagtccctcgctttcatgtggttgaaggagaaatttgctactctttccctcaactatcatggttggtggcttagtccgt 25130445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 45637351 - 45637394
Alignment:
Q  14 atttggtttgcaacgatgtggaaaatttggaaagaaagaaacaa 57  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||    
T  45637351 atttggtttgcaacggtgtgggaaatttggaaagaaagaaacaa 45637394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 21204983 - 21204906
Alignment:
Q  107 attaagtccctcactttcatgtggttgaaggctaaagtaacatcactttccctcaattatcatgtttggtggcttagt 184  Q
    ||||||||  ||||||||||||||||||| || ||| |  | |||||| || |||||||||||| |||||||||||||    
T  21204983 attaagtcaatcactttcatgtggttgaatgcgaaattttcttcacttcccttcaattatcatggttggtggcttagt 21204906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 20510404 - 20510519
Alignment:
Q  104 aagattaagtccctcactttcatgtggttgaaggctaaagt-aacatcactttccctcaattatcatgtttggtggcttagtccgtctaccatcttggac 202  Q
    |||||||||||| || |||| |||||||||||||  ||| | |||| | ||| || |||||| ||||| |||||||||||||||||  |||||  ||| |    
T  20510404 aagattaagtccatctcttttatgtggttgaaggtgaaatttaaca-cgcttcccttcaattttcatggttggtggcttagtccgttcaccatgctgggc 20510502  T
Q  203 attggttaatagttttt 219  Q
    || ||||||||||||||    
T  20510503 ataggttaatagttttt 20510519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 32807623 - 32807563
Alignment:
Q  1 catcattcaagttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacagg 61  Q
    |||| |||| |||||||||||||||||| ||| | ||||||||||||| ||||| ||||||    
T  32807623 catccttcaggttatttggtttgcaacggtgttggaaatttggaaagagagaaataacagg 32807563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 2610836 - 2610789
Alignment:
Q  14 atttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacagg 61  Q
    ||||||| ||| ||| |||||||||||||||| |||||||||||||||    
T  2610836 atttggtatgcgacggtgtggaaaatttggaaggaaagaaacaacagg 2610789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 8813918 - 8813964
Alignment:
Q  11 gttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaa 57  Q
    |||||||||||||||||  | ||| ||||||||||||||||||||||    
T  8813918 gttatttggtttgcaacagtctgggaaatttggaaagaaagaaacaa 8813964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 13609126 - 13609068
Alignment:
Q  13 tatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatg 71  Q
    |||||||||||||||  ||||| ||||||||||||| ||||| |||||| | |||||||    
T  13609126 tatttggtttgcaacagtgtgggaaatttggaaagagagaaataacagggtcttcaatg 13609068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 30972565 - 30972395
Alignment:
Q  15 tttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaatgttacatcaattgtgcaggtcagagaaaagattaagtc 114  Q
    |||||| |||||| | |||||||||||||||||||||||| |||| | | || |||||||| |     |||||| |||||||    || || ||||||||    
T  30972565 tttggtatgcaactacgtggaaaatttggaaagaaagaaataacatgctctttaatggcaaagagtgctcaattatgcaggtggttgataaaattaagtc 30972466  T
Q  115 cctcactttcatgtggttgaaggctaaagtaacatcactttccctcaattatcatgtttggtggcttagtc 185  Q
     || |||||||||||| ||||||| ||| |  | || ||| || |||| |||||||  |||||||||||||    
T  30972465 gctgactttcatgtggctgaaggcgaaatttccttctcttcccttcaactatcatggctggtggcttagtc 30972395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 45680415 - 45680373
Alignment:
Q  15 tttggtttgcaacgatgtggaaaatttggaaagaaagaaacaa 57  Q
    |||||||||| ||  ||||||||||||||||||||||||||||    
T  45680415 tttggtttgctaccgtgtggaaaatttggaaagaaagaaacaa 45680373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 13157352 - 13157397
Alignment:
Q  14 atttggtttgcaacgatgtggaaaatttggaaagaaagaaacaaca 59  Q
    ||||||||||||||  ||||| |||| |||||||||||||||||||    
T  13157352 atttggtttgcaacagtgtgggaaatatggaaagaaagaaacaaca 13157397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12606769 - 12606837
Alignment:
Q  1 catcattcaagttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaa 69  Q
    |||| |||| |||||||| ||||||||  | ||| |||||||||||||||||||||||||| |||||||    
T  12606769 catccttcaggttatttgatttgcaacagtttgggaaatttggaaagaaagaaacaacagggtattcaa 12606837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 27009209 - 27009321
Alignment:
Q  104 aagattaagtccctcactttcatgtggttgaaggctaaagtaacatcactttccctcaattatcatgtttggtggcttagtccgtctaccatcttggaca 203  Q
    ||||||||||| ||| |||| | ||| |||||||| ||| | || || ||| || ||||||| |||| ||||||||||||||||| ||||||  ||||||    
T  27009209 aagattaagtctctcgcttttaggtgattgaaggcgaaatttacttctcttcccttcaattaccatggttggtggcttagtccgtttaccatactggaca 27009308  T
Q  204 ttggttaatagtt 216  Q
    | || ||||||||    
T  27009309 taggctaatagtt 27009321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29691021 - 29691081
Alignment:
Q  1 catcattcaagttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacagg 61  Q
    |||| |||| |||||||||||||||||  ||||  ||||||| ||||||||||||||||||    
T  29691021 catccttcaggttatttggtttgcaacagtgtgagaaatttgaaaagaaagaaacaacagg 29691081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 35590145 - 35590205
Alignment:
Q  15 tttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaa 75  Q
    |||||| |||||| | |||| |||| |||||||||||||| |||||||| |||||||||||    
T  35590145 tttggtatgcaactacgtgggaaatctggaaagaaagaaataacaggtttttcaatggcaa 35590205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 38332223 - 38332179
Alignment:
Q  15 tttggtttgcaacgatgtggaaaatttggaaagaaagaaacaaca 59  Q
    |||||||||| ||  ||||||||||||||||||||||||||||||    
T  38332223 tttggtttgctactgtgtggaaaatttggaaagaaagaaacaaca 38332179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 44736063 - 44736029
Alignment:
Q  104 aagattaagtccctcactttcatgtggttgaaggc 138  Q
    |||||||||||||||||||| ||||||||||||||    
T  44736063 aagattaagtccctcacttttatgtggttgaaggc 44736029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 129300 - 129239
Alignment:
Q  14 atttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaa 75  Q
    ||||||| ||| ||| ||||| |||| |||||||||||| |||||| | |||||||||||||    
T  129300 atttggtatgctacggtgtgggaaatatggaaagaaagagacaacatgatattcaatggcaa 129239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 9840684 - 9840741
Alignment:
Q  11 gttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattca 68  Q
    ||||| |||||||| || || ||| ||||||||||||||||||| |||||| ||||||    
T  9840684 gttatatggtttgctaccatttgggaaatttggaaagaaagaaataacaggatattca 9840741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 39117336 - 39117388
Alignment:
Q  11 gttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggtt 63  Q
    |||||||||| ||| || |||||| |||| |||||||||||||| ||||||||    
T  39117336 gttatttggtatgctactatgtgggaaatctggaaagaaagaaataacaggtt 39117388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 19315183 - 19315120
Alignment:
Q  12 ttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaa 75  Q
    ||||||||||||| ||  | ||| ||||||||||||||||||| |||||||||||||| |||||    
T  19315183 ttatttggtttgctaccgtttgggaaatttggaaagaaagaaataacaggttattcaaaggcaa 19315120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 14920957 - 14920896
Alignment:
Q  14 atttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaa 75  Q
    ||||||| ||| ||| ||||| |||| ||||| ||||||||||||||| |||||||||||||    
T  14920957 atttggtatgctacggtgtgggaaatatggaaggaaagaaacaacaggatattcaatggcaa 14920896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 32097644 - 32097689
Alignment:
Q  14 atttggtttgcaacgatgtggaaaatttggaaagaaagaaacaaca 59  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||    
T  32097644 atttggtttgcgacggtgtggaaaatttggaaggaaagaaacaaca 32097689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 12863576 - 12863461
Alignment:
Q  104 aagattaagtccctcactttcatgtggttgaaggctaaagt-aacatcactttccctcaattatcatgtttggtggcttagtccgtctaccatcttggac 202  Q
    |||||||||||| || |||| |||||||||||||  ||| | |||| | ||| || |||||| ||||| |||||||||||||||||  || || |||| |    
T  12863576 aagattaagtccatctcttttatgtggttgaaggtgaaatttaaca-cgcttcccttcaattttcatggttggtggcttagtccgttcactatgttgggc 12863478  T
Q  203 attggttaatagttttt 219  Q
    || ||||||||||||||    
T  12863477 ataggttaatagttttt 12863461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 22564223 - 22564267
Alignment:
Q  15 tttggtttgcaacgatgtggaaaatttggaaagaaagaaacaaca 59  Q
    |||||||||| ||  ||||||||||||||||||||||||||||||    
T  22564223 tttggtttgctaccctgtggaaaatttggaaagaaagaaacaaca 22564267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 32246805 - 32246865
Alignment:
Q  1 catcattcaagttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacagg 61  Q
    |||| |||| ||||||||||||| |||  ||| | ||||||||||||||||||||||||||    
T  32246805 catctttcaggttatttggtttgtaacagtgtaggaaatttggaaagaaagaaacaacagg 32246865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 16610634 - 16610692
Alignment:
Q  159 tcaattatcatgtttggtggcttagtccgtctaccatcttggacattggttaatagttt 217  Q
    ||||||||||||  |||||||||||||||| |||||| || | |||||| |||||||||    
T  16610634 tcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaatagttt 16610692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 804579 - 804530
Alignment:
Q  11 gttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacag 60  Q
    |||||||||||||||||  ||||  ||||||||||||||||||| |||||    
T  804579 gttatttggtttgcaacagtgtgagaaatttggaaagaaagaaataacag 804530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 8487959 - 8488011
Alignment:
Q  2 atcattcaagttatttggtttgcaacgatgtggaaaatttggaaagaaagaaa 54  Q
    ||||| || |||||||||||||||||  ||||| |||| ||||||||||||||    
T  8487959 atcatacaggttatttggtttgcaacagtgtgggaaatatggaaagaaagaaa 8488011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 12831546 - 12831486
Alignment:
Q  159 tcaattatcatgtttggtggcttagtccgtctaccatcttggacattggttaatagttttt 219  Q
    |||||| ||||| |||||||||||||||||  || || |||| ||| ||||||||||||||    
T  12831546 tcaattttcatggttggtggcttagtccgttcactatgttgggcataggttaatagttttt 12831486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18908728 - 18908676
Alignment:
Q  1 catcattcaagttatttggtttgcaacgatgtggaaaatttggaaagaaagaa 53  Q
    ||||||||| |||||||||| ||||||  ||| | ||||||||||||||||||    
T  18908728 catcattcaggttatttggtgtgcaacagtgtaggaaatttggaaagaaagaa 18908676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 27843382 - 27843434
Alignment:
Q  8 caagttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacag 60  Q
    |||||||| | ||||||||| | ||||||| | ||||||||||||||||||||    
T  27843382 caagttatctagtttgcaacaacgtggaaattatggaaagaaagaaacaacag 27843434  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 32252185 - 32252221
Alignment:
Q  159 tcaattatcatgtttggtggcttagtccgtctaccat 195  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  32252185 tcaattatcatggttggtggcttagtccgtttaccat 32252221  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 2653901 - 2653858
Alignment:
Q  14 atttggtttgcaacgatgtggaaaatttggaaagaaagaaacaa 57  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||    
T  2653901 atttggtttgcaacggtgtgggaaatttggaaagaaagaaacaa 2653858  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 4889365 - 4889432
Alignment:
Q  8 caagttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaa 75  Q
    |||||||||||||||||||  | |||  |||||| |||||||||||| ||||||||||||||| ||||    
T  4889365 caagttatttggtttgcaattacgtgagaaatttagaaagaaagaaataacaggttattcaatagcaa 4889432  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 52251259 - 52251323
Alignment:
Q  11 gttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaa 75  Q
    |||||||||||||||||  | ||||||||||| |||||||||||||| ||| | ||||| |||||    
T  52251259 gttatttggtttgcaacagtctggaaaatttgaaaagaaagaaacaataggatcttcaacggcaa 52251323  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 16909073 - 16909030
Alignment:
Q  155 tccctcaattatcatgtttggtggcttagtccgtctaccatctt 198  Q
    |||||||||||||||| ||||||||||||||||| |||| ||||    
T  16909073 tccctcaattatcatggttggtggcttagtccgtttaccgtctt 16909030  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 25529965 - 25530020
Alignment:
Q  15 tttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaat 70  Q
    |||||||||| ||  ||||| |||||||||||||||||||||||| | ||||||||    
T  25529965 tttggtttgctaccgtgtgggaaatttggaaagaaagaaacaacatgatattcaat 25530020  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 16909217 - 16909171
Alignment:
Q  11 gttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaa 57  Q
    ||||||||||| | |||  ||||||||||||||||||||||||||||    
T  16909217 gttatttggttaggaacagtgtggaaaatttggaaagaaagaaacaa 16909171  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 34703570 - 34703536
Alignment:
Q  104 aagattaagtccctcactttcatgtggttgaaggc 138  Q
    |||||||||||||||||||| ||||||||||||||    
T  34703570 aagattaagtccctcacttttatgtggttgaaggc 34703536  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 44675013 - 44675075
Alignment:
Q  11 gttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggc 73  Q
    |||||||||||||||||  ||||  ||||||  ||||||| ||| ||||||||||||||||||    
T  44675013 gttatttggtttgcaactgtgtgagaaatttataaagaaataaataacaggttattcaatggc 44675075  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 44675124 - 44675190
Alignment:
Q  122 ttcatgtggttgaaggctaaagtaacatcactttccctcaattatcatgtttggtggcttagtccgt 188  Q
    ||||||||||||||||| ||| |  | || ||| || |||||||||||| |||||||||||||||||    
T  44675124 ttcatgtggttgaaggcgaaatttgcttcccttcccttcaattatcatggttggtggcttagtccgt 44675190  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 6723799 - 6723766
Alignment:
Q  104 aagattaagtccctcactttcatgtggttgaagg 137  Q
    |||||||||||||||||||| |||||||||||||    
T  6723799 aagattaagtccctcacttttatgtggttgaagg 6723766  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 40708477 - 40708440
Alignment:
Q  159 tcaattatcatgtttggtggcttagtccgtctaccatc 196  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  40708477 tcaattatcatgttcggtggcttagtccgtttaccatc 40708440  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 25392503 - 25392439
Alignment:
Q  11 gttatttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaa 75  Q
    |||||||||||||| || |  ||| ||||||||||||||||| | |||| ||||||||| |||||    
T  25392503 gttatttggtttgctactacttgggaaatttggaaagaaagagataacaagttattcaaaggcaa 25392439  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 45050 - 45111
Alignment:
Q  14 atttggtttgcaacgatgtggaaaatttggaaagaaagaaacaacaggttattcaatggcaa 75  Q
    ||||||| ||||||| ||||  ||||  ||||||||||||| | ||||||||||||||||||    
T  45050 atttggtatgcaacggtgtgagaaataaggaaagaaagaaatagcaggttattcaatggcaa 45111  T

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