View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_8 (Length: 746)
Name: NF2272_high_8
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 718
Target Start/End: Complemental strand, 31548180 - 31547458
Alignment:
| Q |
1 |
taggtttgcatctttgcctatggtcaaacaggatcagggaaaacctatacaatgatgggaagacctggacatccagacgaaaaagggttgatacctcgtt |
100 |
Q |
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| T |
31548180 |
taggtttgcatctttgcctatggtcaaacaggatcagggaaaacctatacaatgatgggaagacctggacatcctgacgaaaaagggttgatacctcgtt |
31548081 |
T |
|
| Q |
101 |
cattagaacaaatatttcaagcaaaacagtctcagcaacctcaaggctggaaatacgaaatgcaggtaacattcgagtactttcttcttactt-acct-- |
197 |
Q |
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| T |
31548080 |
cgttagaacaaatatttcaagcaaaacagtctcaacaacctcaaggctggaagtacgaaatgcaggtaacatcggagtactttcttcttactttacctca |
31547981 |
T |
|
| Q |
198 |
tattatttcattttaatgtaaacaattttttgaacatgat-----aaggtttctgttataatattttcaggtgtcaatgttggaaatatacaatgaaacc |
292 |
Q |
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||||||| |||| |||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31547980 |
tattattgcattgtaatgtaaacaattttttgaacatgaccagagaaggtttttgttataaaattttcaggtgtcaatgttggaaatatacaatgaaact |
31547881 |
T |
|
| Q |
293 |
attcgagatctgttatctacaaacagattatcatcagatgtaacacgcgtggaaaatggtactcctggaaagcaatacacaatcaaacatgacgtaaatg |
392 |
Q |
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||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31547880 |
attcgtgatctgttatctacaaacagatcatcatcggatgtaacacgcgtggaaaatggtactcctggaaagcaatacacaatcaaacatgacgtaaatg |
31547781 |
T |
|
| Q |
393 |
gaaatacacatgtttctgatcttacagtagtggatgttcacagtgcgaaagaagtcgcgtttcttttaaatcaagctgcaaatagccggtaactattgtt |
492 |
Q |
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| T |
31547780 |
gaaatacacatgtttctgatcttacagtagtggatgttcacagtgcgaaagaggtcgcgtttcttttaaatcaagctgcaaatagcaggtaactattgtt |
31547681 |
T |
|
| Q |
493 |
aaggcactgaaaaatgcaa---atgaacttgctattttatgactagaattttatagctatgtttttctgagaatatatttttattggattaaaatggaca |
589 |
Q |
| |
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||| ||||| ||||||||| |||||||||| ||||||| ||||||||| ||||||| ||||| ||| ||||||||||||| ||||| | ||||| |
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| T |
31547680 |
aagacactggaaaatgcaaatgatgaacttgccattttataactagaattagatagctacatttttaggag-atatatttttattaaattaagagggaca |
31547582 |
T |
|
| Q |
590 |
aactggattggtaaaacataatttgacatgatttttagtgcaacaaaacgttggcttattttctcttagaagttacaatacttcagcatttttatgtcaa |
689 |
Q |
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|||||| || |||||||||||||||| |||| |||| ||||||||||| |||||| |||||| ||||| |||||| |||| | |||||| |||| | |
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| T |
31547581 |
aactggtttagtaaaacataatttgatatga-ttttggtgcaacaaaatgttggc----tttctcatagaaattacaaaactttaacattttcatgtaga |
31547487 |
T |
|
| Q |
690 |
atttaattgtattgattattttggttatt |
718 |
Q |
| |
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| T |
31547486 |
atttaattgtattgattattctggttatt |
31547458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 34651119 - 34651284
Alignment:
| Q |
2 |
aggtttgcatctttgcctatggtcaaacaggatcagggaaaacctatacaatgatgggaagacctggacatccagacgaaaaagggttgatacctcgttc |
101 |
Q |
| |
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|||||||||| || || |||||||| ||||| |||||||||||||||||||||||||| || |||||||||| | ||||| || |||||||||||||| |
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| T |
34651119 |
aggtttgcattttcgcatatggtcagacaggttcagggaaaacctatacaatgatgggcaggcctggacatctcggagaaaagggtttgatacctcgttc |
34651218 |
T |
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| Q |
102 |
attagaacaaatatttcaagcaaaacagtctcagcaacctcaaggctggaaatacgaaatgcaggt |
167 |
Q |
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| T |
34651219 |
gctagaacaaatatttcaaacaagacagtctcaacaaccgcagggctggaaatatgaaatgcaggt |
34651284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 255 - 478
Target Start/End: Original strand, 34651370 - 34651596
Alignment:
| Q |
255 |
attttcaggtgtcaatgttggaaatatacaatgaaaccattcgagatctgttatctacaaacagattat----catcagatgtaacacgcgtggaaaatg |
350 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||| ||| |||| |||||| || || | ||||||| ||| || | ||||||| |
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| T |
34651370 |
atttacaggtgtcaatgttggaaatatacaatgaaacgattcgtgatttgttggctacaa-caaataagtccccatcagacacaacccgtgcagaaaatg |
34651468 |
T |
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| Q |
351 |
gtactcctggaaagcaatacacaatcaaacatgacgtaaatggaaatacacatgtttctgatcttacagtagtggatgttcacagtgcgaaagaagtcgc |
450 |
Q |
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| T |
34651469 |
gtactcctgggaagcaatactcaatcaagcatgatgccagtggaaatactcttgtttctgatcttaccgtggtagatgttgagagtgtaaaagaggtcgc |
34651568 |
T |
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| Q |
451 |
gtttcttttaaatcaagctgcaaatagc |
478 |
Q |
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||||||||||||||||| ||||||||| |
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| T |
34651569 |
atttcttttaaatcaagcggcaaatagc |
34651596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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