View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2272_high_83 (Length: 244)
Name: NF2272_high_83
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_83 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 33614441 - 33614672
Alignment:
| Q |
1 |
ctacgaacatggaacataggtttagcgtgtcattgtccaaatccactatgtttgactcagttatcagtctatgaaaactaatgttttaagttaatgacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33614441 |
ctacgaacatggaacataggtttagcgtgtcattgtccaaatccactatgtttgactcagttatcagtctatgaaaactaatgttttaagttaatgacct |
33614540 |
T |
|
| Q |
101 |
taagaaaaaatcagctctttcgcgcggtctaacat---ctaacctttgctcgtctcagagacttcctcgtctaatagtttaaccatctgtttgttgagat |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
33614541 |
taagaaaaaatcagctctttcgcgcggtctaacatctcctaaccttcgctcgtctcagagacttcctcgtctaataatttaaccatctgtttgctgagat |
33614640 |
T |
|
| Q |
198 |
cagctacgaggttattatttttaagtgtaaac |
229 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| |
|
|
| T |
33614641 |
tggctatgagattattatttttaagtgtaaac |
33614672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University