View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_high_9 (Length: 742)
Name: NF2272_high_9
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_high_9 |
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| [»] scaffold0205 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 19 - 733
Target Start/End: Complemental strand, 53349813 - 53349115
Alignment:
| Q |
19 |
gatatgccacaagaaagcttatgaaggaagtaatcctcaacatttttcattttcctgtgaccatttaaggtacattgtaaatcaacaaatgcataacttc |
118 |
Q |
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| T |
53349813 |
gatatgccacaagaaagcttatgaaggaagtaatcctcatcatttttcattttcctgtgaccatttaaggtacattgtaaatcaacaaatgcataacttc |
53349714 |
T |
|
| Q |
119 |
atatttaagaataaaagtaatttgattgatgagtttgatttcatcttacctgtctagtatcaaccaagtagcctttaactttgtggctgattttaatgca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53349713 |
atatttaagaataaaagtaatttgattgatgagtttgatttcatcttacctgtctagtatcaaccaagtagcctttaactttgtggctgattttaatgca |
53349614 |
T |
|
| Q |
219 |
acagtcttaggtgaagatcccatggctatttctatattaaatccaatctgaaaaaatgatgcacaatattgtatcattagctagtagctacagtaaatat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53349613 |
acagtcttaggtgaagatcccatggctatttctatattaaatccaatctgaaaaaatgtcgcacaatattgtatcattagctagtagctacagtaaatat |
53349514 |
T |
|
| Q |
319 |
agttaacatgtgacattttcttcaaattttaatgttaccctgctatatccaaatccaaatagagaaaaagcttataactagtgtattcatattaccttca |
418 |
Q |
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| T |
53349513 |
agttaacatgtgacattttcttcaaattttaatgttaccctgctatatccaaatccaaatagagaaa---------------gtattcatattaccttca |
53349429 |
T |
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| Q |
419 |
ttgatttatacagtttataaatatgagcaagctcctcatttttcatatactcttccttcttttttgcaacttctgcctcaatgatattctgatttgctcc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53349428 |
ttgatttatacagtttataaatatgagcaagctcctcatttttcatatactcttccttcttttttgcaacttctgcctcaatgatattctgatttgctcc |
53349329 |
T |
|
| Q |
519 |
aaatgctaatctattgtcaacactaattttgtatcccacttccaaaagaaaaattgatgataaataatcaaaagagacacataagtatactgtctatcca |
618 |
Q |
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| T |
53349328 |
aaatgctaatctattgtcaacactaattttgtatcccacttccagaagaaaaattgatgataaataatcaaaagagacacataagtatactgtctatcca |
53349229 |
T |
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| Q |
619 |
tacataaaatgcatatctaaattttatggtatggtttgatccatatagccgatttcacgtgtcaaagttagagtttaacttaattaccactgtagtatgt |
718 |
Q |
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| T |
53349228 |
tacat-aaatgcatatctaaattttatggtatggtttgatccatatagccgatttcacgtgtccaagttagactttaatttgattaccactgtagtatgt |
53349130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 38444401 - 38444460
Alignment:
| Q |
130 |
taaaagtaatttgattgatgagtttgatttcatcttacctgtctagtatcaaccaagtag |
189 |
Q |
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| T |
38444401 |
taaatgtaatttcattgatcagtttgatttcatcttacctgtctagtatcaaccaagtag |
38444460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 38444459 - 38444540
Alignment:
| Q |
221 |
agtcttaggtgaagatcccatggctatttctata--ttaaatccaatctgaaaaaatgatgcacaatattgtatcattagcta |
301 |
Q |
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| T |
38444459 |
agtcttaggtgtagatcgtatagctatttctatatattaaatccaacctgaaaatatgatgcacaatattgt-tcattagcta |
38444540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 440
Target Start/End: Original strand, 38444573 - 38444606
Alignment:
| Q |
407 |
atattaccttcattgatttatacagtttataaat |
440 |
Q |
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| T |
38444573 |
atattaccttcattgatttatacagtatataaat |
38444606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 402 - 520
Target Start/End: Original strand, 20577 - 20695
Alignment:
| Q |
402 |
tattcatattaccttcattgatttatacagtttataaatatgagcaagctcctcatttttcatatactcttccttcttttttgcaacttctgcctcaatg |
501 |
Q |
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|||| ||||||||| |||| ||||||| |||| |||| | ||||||||||||| |||| |||||||||||||||| |||||| |||| | |||||| |
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| T |
20577 |
tattgatattacctcatttgagttatacaatttagaaatctttgcaagctcctcatggttcagatactcttccttctttcttgcaagttcttcgtcaatg |
20676 |
T |
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| Q |
502 |
atattctgatttgctccaa |
520 |
Q |
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| T |
20677 |
atccgctgatttactccaa |
20695 |
T |
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