View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_1 (Length: 1282)
Name: NF2272_low_1
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_1 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 678; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 427 - 1282
Target Start/End: Original strand, 7369554 - 7370407
Alignment:
| Q |
427 |
acaagagaaaacttacaagtggtgatatcaataaaaagatggaaactagaagctgtttttaccattgttaaggaatgtctccttacaaacttgacactaa |
526 |
Q |
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| T |
7369554 |
acaagggaaaacttataagtggtgatatcaataaaaagatggaaactagaagctgtttttaccattgttaaggaatgtctccttacaaacttgacactaa |
7369653 |
T |
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| Q |
527 |
agttgttaaaatacagcaacgaactcaataaaaagagacgagatgtcgacaatcagaaatcatggcaacaaacaaactcaataaaaagagaagagacgtt |
626 |
Q |
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| T |
7369654 |
agttgttaaagtatagcaacgaactcaataaaaagagacgagatgtcgacaatcagaaatcatggcaacaaacaaactcaataaaaagagaagagacgtt |
7369753 |
T |
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| Q |
627 |
gacactcggaaactatggcaacgaactcaaagaatccttctttgaagcttgaaagttacaactacttgcttgaaattctttcatcacattatcaccttca |
726 |
Q |
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| T |
7369754 |
gacactcggaaactatggcaacgaactcaaataatccttctttgaagcttgaaagttacaactacttgcttgaaattctttcatcacattatcaccttca |
7369853 |
T |
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| Q |
727 |
ctcgttcatgagcaacatttcatcataaaaaatgatgaattaatgatgaagtaaacgcataagtaatagtagtaggtaatgtacaagttactatctgaaa |
826 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
7369854 |
ctcgttcatgagcaacatttcatcataaaaaatgatgaattaatgatgaagtaaacgcataagtaatagtagtaagtaacgtacaagttactatctgaaa |
7369953 |
T |
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| Q |
827 |
ctttcttcatc-nnnnnnnnnnnnnnnnnggacataacagagatgattgaaattctacacagctgcacatattttccaaactaannnnnnnnnaatcatt |
925 |
Q |
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| T |
7369954 |
ctttcttcatcaaaacaatcaataaaaaaggacataacagagatgattgaaattctacacagctgcacatattttccaaactaa-ttttttttaatc-tt |
7370051 |
T |
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| Q |
926 |
taacatgtttataataatgttttcaagtgaaacatttattagatcacaacatcaaataaaaatatgatttggacacacacttgagtgatatgcattttta |
1025 |
Q |
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| T |
7370052 |
taacatgtttataatttttttttcaagtgcaacatttattagatc-caacatcaaataaaaatatgatttggacaaacacttgagtgatatgcattttta |
7370150 |
T |
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| Q |
1026 |
tgtgtgtgtaatcatttttatttggggtcaaaaacaatcctatcagatagtaaattgtcttcagaatggggccaaaaacttaatacaaacactaataagt |
1125 |
Q |
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| T |
7370151 |
tgtgtgtgtaatcatttttatttggggtcaaaaacaattctatcagatagtaaattgtcttcagaatggggccaaaaacttaatacaatcactaataagt |
7370250 |
T |
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| Q |
1126 |
tctgtttttccaacatcaagaatgcaaagctatcactcaaagaagcattgtggttcagttctcacattcaattcaactaactaatccattcatacaaccg |
1225 |
Q |
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| T |
7370251 |
tctgtttttccaacatcaagaatgcaaagctatcactcaaacaagcattgtggttcagtcctcacattcaattcaactaactaatccattcatacaacca |
7370350 |
T |
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| Q |
1226 |
tttgaataagaaaccatctcttaacacagccctaataatatcaagatcacaaagcta |
1282 |
Q |
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| T |
7370351 |
tttgaataagaaaccatctcttaacacagccctaataatatcaagatctcaaagcta |
7370407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-149
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 7369102 - 7369398
Alignment:
| Q |
1 |
ttagaactttgtatatattaatgctcatcctaacctaagtctttatttcacaaaagaaattatccattgaccactgtcttcgtccctaatgcgagcacca |
100 |
Q |
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| T |
7369102 |
ttagaactttgtatatattaatgctcatcctaacctaagtctttatttcacaaaagaaattatccattgaccactgtcttcgtccctaatgcaagcacca |
7369201 |
T |
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| Q |
101 |
attgctgtaaatccaggatcagcgaaaaatatagtgtcaatgtagcactttaggcaacctgcaggaggaggaacccatgctgggacatgattgatagata |
200 |
Q |
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| T |
7369202 |
attgctgtaaatccaagatcagcgaaaaatatagcgtcaatgtagcactttaggtaacctgcaggaggaggaacccatgctgggacatgattgatagaca |
7369301 |
T |
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| Q |
201 |
cgtcttatgtaccattctaatccttgataaaaacaacgctgcataagtgtgagtttgctaaggagaagaaaccctgctttctcgtatacgtatgctc |
297 |
Q |
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| T |
7369302 |
cgtcttaggtaccattctaatccttgataaaaacaacgctgcataagtgtgagtttgctaaggagaagaaaccctgctttcccgtatacgtatgctc |
7369398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 281 - 357
Target Start/End: Original strand, 7369410 - 7369486
Alignment:
| Q |
281 |
ctcgtatacgtatgctcataatgcttccatatactacataaattcatagcaaaataataagatgaactaacataaca |
357 |
Q |
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| T |
7369410 |
ctcgtatacgtatgctcataatgcttccatatactacataaattcatagcaaaataataagatgaactaacataaca |
7369486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1191 - 1246
Target Start/End: Original strand, 7352835 - 7352892
Alignment:
| Q |
1191 |
attcaattcaactaactaatccattca--tacaaccgtttgaataagaaaccatctct |
1246 |
Q |
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| T |
7352835 |
attcaattcaactaactaatccattcatttacaaccatttgagtaagaaacaatctct |
7352892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1162 - 1218
Target Start/End: Original strand, 7365203 - 7365260
Alignment:
| Q |
1162 |
tcaaagaagcattgtggttcagttctca-cattcaattcaactaactaatccattcat |
1218 |
Q |
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| T |
7365203 |
tcaaagaagcattttttttcagttcttaacattcaattcaactaactaacccattcat |
7365260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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