View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_100 (Length: 226)
Name: NF2272_low_100
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_100 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 16640875 - 16641100
Alignment:
| Q |
1 |
tccaattcttttcaaaagcttaaacaagacacactttgaaatttttagaaagtgannnnnnngtaagttaaaagttgattctttgaatatatgcttacga |
100 |
Q |
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| T |
16640875 |
tccaattcttttcaaaagcttaaacaagacacactttgaaatttttagaaagtgatttttttgtaagttaaaagttgattctttgaatatatgcttacgc |
16640974 |
T |
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| Q |
101 |
aaacaagcaaagtccatgaactgaaaaatctacaagaacgataaaatttttgcaataagacagtcataacattgcacgcacaagcgtaaaagtaatacct |
200 |
Q |
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| T |
16640975 |
aaacaagcaaagtccatgaactgaaaaatctacaagaacgataaaatttttgcaattagacagtcataacattgcacgcacaagcgtaaaagtaatacct |
16641074 |
T |
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| Q |
201 |
cagttttggaagaaacattcactttc |
226 |
Q |
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| T |
16641075 |
cagttttggaagaaacattcactttc |
16641100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 14630154 - 14630371
Alignment:
| Q |
4 |
aattcttttcaaaagcttaaacaagacacactttgaaatttttagaaagtgannnnnnngtaagttaaaagttgattctttgaatatatgcttacgaaaa |
103 |
Q |
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| T |
14630154 |
aattcttttcaaaagcttaaacaaaacacactttgaaatttttagaaagtgatttttttgtaagataaaagttgattctttgaatatatgctttcacaat |
14630253 |
T |
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| Q |
104 |
caagcaaagtccatgaactgaaaaatctacaagaacgataaaatttttgcaataagacagtcataacattgcacgcacaagcgtaaaagtaatacctcag |
203 |
Q |
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| T |
14630254 |
caagcaaagtccatgaactgaaaaatctacaagaacgttaaattttttgcaataagaaagtcacaacattgcacacacaagcataaaagtaatacctcag |
14630353 |
T |
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| Q |
204 |
ttttggaagaaacattca |
221 |
Q |
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| T |
14630354 |
ttttggaagaaacattca |
14630371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 16632097 - 16632191
Alignment:
| Q |
127 |
aatctacaagaacgataaaatttttgcaataagacagtcataacattgcacgcacaagcgtaaaagtaatacctcagttttggaagaaacattca |
221 |
Q |
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| T |
16632097 |
aatctacaagaacgataaaacttttgcaataagaaagtcataacattgcacacacaagcgtaaaagtaatacctcagttttggaagaaacattca |
16632191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 16619618 - 16619740
Alignment:
| Q |
4 |
aattcttttcaaaagcttaaacaagacacactttgaaatttttagaaagtgannnnnnngtaagttaaaagttgattctttgaatatatgcttacgaaaa |
103 |
Q |
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|||||||||||||||||||||| ||||| ||||||| | ||||||||| || |||| ||||||| |||||||||||||||| ||| | | | |
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| T |
16619618 |
aattcttttcaaaagcttaaacctgacacgctttgaattctttagaaagagatttttt-gtaaaataaaagtcgattctttgaatatatacttgcagaga |
16619716 |
T |
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| Q |
104 |
caagcaaagtccatgaactgaaaa |
127 |
Q |
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| T |
16619717 |
caagcaaagtccctgaactgaaaa |
16619740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 16619782 - 16619826
Alignment:
| Q |
182 |
aagcgtaaaagtaatacctcagttttggaagaaacattcactttc |
226 |
Q |
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|||| ||||||| ||||||||||||||| |||| ||||||||||| |
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| T |
16619782 |
aagcttaaaagtgatacctcagttttggcagaagcattcactttc |
16619826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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