View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_101 (Length: 221)
Name: NF2272_low_101
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_101 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34320917 - 34320697
Alignment:
| Q |
1 |
gtaattccatttccttcttatctgcaaccatagacgagaaccaaacaatgtttcctgcacacttttcagacaatgcaggaaccattcttttgcgaagatc |
100 |
Q |
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| T |
34320917 |
gtaattccatttccttcttatctgcaaccatagacgagaaccaaacaatgtttcctacacacttttcagacaatgcaggaaccattcttttgcgaagatc |
34320818 |
T |
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| Q |
101 |
tacacccatgctaaataaagccgtctggaaatttaatcccattagtgaaactgcacgcttataaatccatgcagttactgcttgtgcacgtgatggaggt |
200 |
Q |
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| T |
34320817 |
tacacccatgctaaataaagccgtctggaaatttaatcccattagtgaaactgcacgcttataaatccatgcagttactgcttgtacacgtgatggaggt |
34320718 |
T |
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| Q |
201 |
gaatgcatagaactagaagtt |
221 |
Q |
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| T |
34320717 |
gaatgcatagaactagaagtt |
34320697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 34329821 - 34329634
Alignment:
| Q |
5 |
ttccatttccttcttatctgcaaccatagacgagaaccaaacaatgtttcctgcacacttttcagacaatgcaggaaccattcttttgcgaagatctaca |
104 |
Q |
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| T |
34329821 |
ttccatttccttcttatctgcaaacatagacgagaaccaaaatatgttccctacacatttttcagacaacggaggaaccattcttttgcgaaaatcaaca |
34329722 |
T |
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| Q |
105 |
cccatgctaaataaagccgtctggaaatttaatcccattagtgaaactgcacgcttataaatccatgcagttactgcttgtgcacgtg |
192 |
Q |
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| T |
34329721 |
gccatactaaacaatgatgtcttgaaatttaatcccgttattgaaaccgtgcatttgtaaatccatgcagtcacaacttgtacacgtg |
34329634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 34333889 - 34333815
Alignment:
| Q |
37 |
agaaccaaacaatgtttcctgcacacttttcagacaatgcaggaaccattcttttgcgaagatctacacccatgc |
111 |
Q |
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| T |
34333889 |
agaaccatactatgtttcctacagacttatcagacaatggaggaaccattcttctacgaagatccacagccatgc |
34333815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 36627146 - 36627319
Alignment:
| Q |
5 |
ttccatttccttcttatctgcaaccatagacgagaaccaaacaatgtttcctgcacacttttcagacaatgcaggaaccattcttttgcgaagatctaca |
104 |
Q |
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||||||||||||||||| ||| | ||||||||| ||||||| ||||| ||| |||| | ||||||||||| ||||||||||||| | |||||||| ||| |
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| T |
36627146 |
ttccatttccttcttatttgccaacatagacgaaaaccaaaatatgttccctacacaatgttcagacaatggaggaaccattcttctacgaagatcgaca |
36627245 |
T |
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| Q |
105 |
cccatgctaaataaagccgtctggaaatttaatcccattagtgaaactgcacgcttataaatccatgcagttac |
178 |
Q |
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| T |
36627246 |
atcatgctaaacattgccgtctggaaatttaaccccattattgaaacggcatgcttgtaaatccatgcagttac |
36627319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 6 - 178
Target Start/End: Original strand, 36632719 - 36632891
Alignment:
| Q |
6 |
tccatttccttcttatctgcaaccatagacgagaaccaaacaatgtttcctgcacacttttcagacaatgcaggaaccattcttttgcgaagatctacac |
105 |
Q |
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|||||||||||||||| ||| | |||| |||| ||||| ||||| |||||||| ||||| ||||||| |||| |||||||||| | ||||| |||| |
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| T |
36632719 |
tccatttccttcttatttgccaacatatacgaattgcaaactatgttccctgcacatttttccgacaatggaggatccattctttttctaagatttacag |
36632818 |
T |
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| Q |
106 |
ccatgctaaataaagccgtctggaaatttaatcccattagtgaaactgcacgcttataaatccatgcagttac |
178 |
Q |
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| T |
36632819 |
ccatgcaaaacgacgccgtttggaaatttaaccccattattgaaactgtatgcttgtaaatccatgcagttac |
36632891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 29 - 178
Target Start/End: Original strand, 36621945 - 36622094
Alignment:
| Q |
29 |
catagacgagaaccaaacaatgtttcctgcacacttttcagacaatgcaggaaccattcttttgcgaagatctacacccatgctaaataaagccgtctgg |
128 |
Q |
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| T |
36621945 |
catagacgaaaaccaaagtatgttccctacacatttttcagacaacggaggaaccattcttttgcgtagattcacaaccatgtaaaacgaagccgtctgg |
36622044 |
T |
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| Q |
129 |
aaatttaatcccattagtgaaactgcacgcttataaatccatgcagttac |
178 |
Q |
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| T |
36622045 |
aaatttaaccccattattgatacagcatgcttgtaaatccatgcaattac |
36622094 |
T |
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