View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_12 (Length: 599)
Name: NF2272_low_12
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Complemental strand, 40208661 - 40208081
Alignment:
| Q |
1 |
agaggtgaatccaaaaaagaaggatttaagagtcgttgggtcgggtagtagccgcatagtggtagggtcttgcaagcgaaatcaagctaataaggtcggc |
100 |
Q |
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| T |
40208661 |
agaggtgaatccaaaaaagaaggatttaagagtcgttgggtcgggtagtagccgcatagtggtagggtcttgcaagcgaaatcaagctaataaggtcggc |
40208562 |
T |
|
| Q |
101 |
nnnnnnnn-ctatatagtaaaaataattaatgtcattgttcataatacatgcgtatacaaacaaaaaactagtaatttaaaaattaatttgattggcaca |
199 |
Q |
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| T |
40208561 |
aaaaaaaaactatatagtaaaa-taattaatgtcattgttcataatacatgcgtatacaaacaaaaaactagtaatttaaaaatgaatttgattggcaca |
40208463 |
T |
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| Q |
200 |
tttgattccttaaataccatatttctactcattcatcaatccacacaaaaatagtacacttcaattaagtaacacacacccaccacctcttggcacaaac |
299 |
Q |
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| T |
40208462 |
tttgattccttaaataccatatttctactcattcatcaatccacacaaaaatagtacacttcaattaagtaacacacacccaccacctcttggcacaaac |
40208363 |
T |
|
| Q |
300 |
acaagaacacaaacatgggcaaagatgttgaggttcaagaacaaggtggtgaattttcagctaaggattaccaagatccaccaccagcacctttgtttga |
399 |
Q |
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| T |
40208362 |
acaagaacacaaacatgggcaaagatgttgaggttcaagaacaaggtggtgaattttcagctaaggattaccaagatccaccaccagcacctttgtttga |
40208263 |
T |
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| Q |
400 |
tgtagatgagttaacaaagtggtctttgtacagagctgtcatagctgagtttgtagcaactcttctcttcctatacatcactgttttgaccattattggt |
499 |
Q |
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| T |
40208262 |
tttagatgagttaacaaagtggtctttgtacagagctgtcatagctgagtttgtagcaactcttctcttcctatacatcactgttttgaccattattggt |
40208163 |
T |
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| Q |
500 |
tatagtagacaaagtgatacctctatcaaaggtaacacagaatgtgatggtgttggtgttttgggaattgcttgggcttttg |
581 |
Q |
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| T |
40208162 |
tatagtagacaaagtgataccactatcaaaggtaacacagaatgtgatggtgttggtgttttgggaattgcttgggcttttg |
40208081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 320 - 504
Target Start/End: Original strand, 21792997 - 21793178
Alignment:
| Q |
320 |
aaagatgttgaggttcaagaacaaggtggtgaattttcagctaaggattaccaagatccaccaccagcacctttgtttgatgtagatgagttaacaaagt |
419 |
Q |
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| T |
21792997 |
aaagatgttgaggttcaagaacaaggag---aatactcagcaaaagattaccaagacccacctccagcaccattgatagatgttgaggagctaacaaagt |
21793093 |
T |
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| Q |
420 |
ggtctttgtacagagctgtcatagctgagtttgtagcaactcttctcttcctatacatcactgttttgaccattattggttatag |
504 |
Q |
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| T |
21793094 |
ggtcattttatagagctcttatagctgagtttgttgcaacacttctcttcctttatgtcactgttttgaccattattggttatag |
21793178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 481
Target Start/End: Complemental strand, 31460935 - 31460873
Alignment:
| Q |
419 |
tggtctttgtacagagctgtcatagctgagtttgtagcaactcttctcttcctatacatcact |
481 |
Q |
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|||||||| |||||||||| ||||||||||||||||| ||| |||| ||| | ||||||||| |
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| T |
31460935 |
tggtctttctacagagctgggatagctgagtttgtagccacttttctgttcttgtacatcact |
31460873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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