View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_14 (Length: 567)
Name: NF2272_low_14
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 29908958 - 29908667
Alignment:
| Q |
20 |
gctcctggaaaggagtcttggagattcattgttcgtgtggtgcatctgtgggaggttcctgcgtttcttcatcctgaacaggtgaattcggttgagatgg |
119 |
Q |
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| T |
29908958 |
gctcctggaaaggagtcttggagattcattgttcgtgtggtgcgtctgtgggaggctcctgcgtttcttcatcctgaacaggtgaattcggttgagatgg |
29908859 |
T |
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| Q |
120 |
tgttggttgatgagaaggttggtgtttttatttaaacttccctggttttagcttttgattttgtcatttgtccttttgctcaaggttgtatgtcatgttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29908858 |
tgttggttgatgagaaggttggtgtttttatttaaactgccctggttttagcttttgtttttgtcatttgtccttttgttcaaggttgtatgtcatgttg |
29908759 |
T |
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| Q |
220 |
attttgaagggtgttaggattcacgctactgttcgtaagcagttgttgtacctcttccagaataagttggtcgagggtgtggtgtacaagct |
311 |
Q |
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| T |
29908758 |
attttgaagggtgttaggattcacgctactattcgtaagcagctgttgtacctcttccataataagttggtcgagggtgtggtgtacaagct |
29908667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 435 - 553
Target Start/End: Complemental strand, 29908665 - 29908547
Alignment:
| Q |
435 |
ccttaatcttaccagtgttaatgagattgttcagcagaccgttgatattcatctgctggtggtttgacttttgtaacatatttggtgaaattttcgcggt |
534 |
Q |
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| T |
29908665 |
ccttaatcttaccaatgttaatgagattgttcagcagaccattgatattcatctgctggtggtttgacttttgtaacatatttggtgaaattttcgcggt |
29908566 |
T |
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| Q |
535 |
ttaatgagcctttttgaat |
553 |
Q |
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| T |
29908565 |
ttaatgagcctttttgaat |
29908547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 29908140 - 29908023
Alignment:
| Q |
22 |
tcctggaaaggagtcttggagattcattgttcgtgtggtgcatctgtgggaggttcctgcgtttcttcatcctgaacaggtgaattcggttgagatggtg |
121 |
Q |
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|||||||| |||||||||||||||| ||||||| || | | |||||||||| | || |||||||| | ||||| | ||||| ||||||||||| |
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| T |
29908140 |
tcctggaagagagtcttggagattcaagcttcgtgttgttcgtttgtgggaggtgcgtgattttcttcaatcataacagatcaattcaattgagatggtg |
29908041 |
T |
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| Q |
122 |
ttggttgatgagaaggtt |
139 |
Q |
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| T |
29908040 |
tttgttgatgagaaggtt |
29908023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 289
Target Start/End: Complemental strand, 13792108 - 13792034
Alignment:
| Q |
215 |
tgttgattttgaagggtgttaggattcacgctactgttcgtaagcagttgttgtacctcttccagaataagttgg |
289 |
Q |
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||||| ||||| ||||||| | |||||| || |||||||| |||||||||||||| || ||||| || ||||||| |
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| T |
13792108 |
tgttgtttttgtagggtgtcaagattcatgccactgttcggaagcagttgttgtatcttttccataagaagttgg |
13792034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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