View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2272_low_19 (Length: 524)
Name: NF2272_low_19
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2272_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 16 - 506
Target Start/End: Complemental strand, 7888092 - 7887605
Alignment:
| Q |
16 |
atcaatcaattttcaattataaaatagataccaatgaaagtcctaatcaacgtgcgaactctcacctattccaactttaaattgattgaaaactttaaat |
115 |
Q |
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| T |
7888092 |
atcaatcaattttcaattataaaatagataccaatgaaagtcctaatcaacgtgcgaactctcacctattccaactttaaattgattgaaaactttaaat |
7887993 |
T |
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| Q |
116 |
ttaaattaaagattgatttatcgttccataaaattaaaagatcgaattattcaaactctacaattttgagtatcaatattcactcgataagataagtttg |
215 |
Q |
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| T |
7887992 |
ttaaattaaagattgatttatcgttccataaaattaaaagatcgaattattcaaactctacaattttgagtatcaatattcactcgataagataagtttg |
7887893 |
T |
|
| Q |
216 |
ctagctaaaataacctgataggaagaagatgcagttccaaagaggaagttacgtggaaatggggatgaacttaaattattttctaaggacacaaaaccac |
315 |
Q |
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| T |
7887892 |
ctagctaaaataacctgataggaagaagatgcagttccaaagaggaagttacgtggaaatagggatgaacttaaattattttctaaggacacaaaaccac |
7887793 |
T |
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| Q |
316 |
atgatcccatgaaaatggagaagataaagcttagtacaaagagggcatgaagaagaagttggaatggaagctccatannnnnnnnnnnnnnnnnnnagtg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
7887792 |
atgatcccatgaaaatggagaagataaagcttagtacaaagaggacatgaagaagaagttggaatggaagctccatatgttgtgtgtgtttgtgtgagtg |
7887693 |
T |
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| Q |
416 |
atcaagacattatataatatgattgcgtgatcaagatattttgcaagttgcatggaccgttgacagtgacctgacactgaccacaatcatt |
506 |
Q |
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| T |
7887692 |
atcaagacattatataatatgattgagtgatcaa---attttgcaagttgcttggaccgttgacagtgacctgacactgaccacaatcatt |
7887605 |
T |
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