View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2272_low_20 (Length: 520)

Name: NF2272_low_20
Description: NF2272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2272_low_20
NF2272_low_20
[»] chr2 (3 HSPs)
chr2 (9-361)||(14430377-14430742)
chr2 (397-484)||(14430287-14430374)
chr2 (234-271)||(44183981-44184018)
[»] chr8 (1 HSPs)
chr8 (207-271)||(30663628-30663692)
[»] chr1 (2 HSPs)
chr1 (207-271)||(22855101-22855165)
chr1 (223-271)||(14135941-14135989)
[»] chr5 (2 HSPs)
chr5 (217-272)||(35336658-35336713)
chr5 (209-271)||(34126347-34126409)
[»] chr4 (2 HSPs)
chr4 (217-271)||(2297330-2297384)
chr4 (236-276)||(40418432-40418472)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 14430742 - 14430377
Alignment:
Q  9 agcacagaagcctaagaagaataaaatgggaatgggattgggagcagggttgcttggaggtgctttaggtgggatgttgattggagatatgatgtctgat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14430742 agcacagaagcctaagaagaataaaatgggaatgggattgggagcagggttgcttggaggtgctttaggtgggatgttgattggagatatgatttctgat 14430643  T
Q  109 gcttcttcttatgatgctggatatgatgctggctttgatgatggtggttttgat------------ttttaattcatgtcttgttagcatcatttcactt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||| ||||||||  ||||||||||||    
T  14430642 gcttcttcttatgatgctggatatgatgctggctttgatgatggtggttttgatggtggttttgatttttaattcatctcttgttactatcatttcactt 14430543  T
Q  197 ttggtatctgtttttatttgatttcgaggatgctttctggtgtttcatattgaagctaacatgaatttgtatttaacttttgatatataatataactcat 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14430542 ttggtatctgtttttatttgatttcgaggatgctttctggtgtttcatattgaagctaacatgaatttgtatttaacttttgatatataatataactcat 14430443  T
Q  297 g-ttgtgacatcaaatttggttttttgtaatttttgtatagtagcatatcatattttgttggcaaa 361  Q
    | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14430442 gtttgtgacatcaaatttggttttttttaatttttgtatagtagcatatcatattttgttggcaaa 14430377  T

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Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 397 - 484
Target Start/End: Complemental strand, 14430374 - 14430287
Alignment:
Q  397 tgtgtagtttgtgaccatgaggattaggcttattgatgagaaattttagagcaactaaattaactgaataatcaaatcaactaaagaa 484  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14430374 tgtgtagtttgtgagcatgaggattaggcttattgatgagaaattttagagcaactaaattaactgaataatcaaatcaactaaagaa 14430287  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 44183981 - 44184018
Alignment:
Q  234 tggtgtttcatattgaagctaacatgaatttgtattta 271  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  44183981 tggtgtttcagattgaagctaacctgaatttgtattta 44184018  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 30663628 - 30663692
Alignment:
Q  207 tttttatttgatttcgaggatgctttctggtgtttcatattgaagctaacatgaatttgtattta 271  Q
    ||||| ||| |||| ||||||||||| |||||||| | |||||||||||| ||||||||||||||    
T  30663628 tttttttttaattttgaggatgctttttggtgttttagattgaagctaacttgaatttgtattta 30663692  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 22855165 - 22855101
Alignment:
Q  207 tttttatttgatttcgaggatgctttctggtgtttcatattgaagctaacatgaatttgtattta 271  Q
    ||||||||| |||| |||||| |||| |||||||||| ||||||||||||  |||||||||||||    
T  22855165 tttttattttattttgaggatactttttggtgtttcagattgaagctaaccagaatttgtattta 22855101  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 14135989 - 14135941
Alignment:
Q  223 aggatgctttctggtgtttcatattgaagctaacatgaatttgtattta 271  Q
    |||||||||| |||||||||| ||| |||||||| ||||||||||||||    
T  14135989 aggatgctttttggtgtttcaaatttaagctaacctgaatttgtattta 14135941  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 35336658 - 35336713
Alignment:
Q  217 atttcgaggatgctttctggtgtttcatattgaagctaacatgaatttgtatttaa 272  Q
    |||| ||||||||||| |||||||||| |||||||||||  |||||||||||||||    
T  35336658 attttgaggatgctttttggtgtttcaaattgaagctaatttgaatttgtatttaa 35336713  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 34126409 - 34126347
Alignment:
Q  209 tttatttgatttcgaggatgctttctggtgtttcatattgaagctaacatgaatttgtattta 271  Q
    ||||||| |||| ||| ||||| | |||||||| | ||||||| |||||||||||||||||||    
T  34126409 tttattttattttgagaatgctatttggtgttttaaattgaaggtaacatgaatttgtattta 34126347  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 2297330 - 2297384
Alignment:
Q  217 atttcgaggatgctttctggtgtttcatattgaagctaacatgaatttgtattta 271  Q
    |||| ||||||||||| |||||||||| ||| |||||||  ||||||||||||||    
T  2297330 attttgaggatgctttttggtgtttcagattaaagctaatttgaatttgtattta 2297384  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 40418472 - 40418432
Alignment:
Q  236 gtgtttcatattgaagctaacatgaatttgtatttaacttt 276  Q
    |||||||| |||||||||| | |||||||||||||||||||    
T  40418472 gtgtttcagattgaagctagcttgaatttgtatttaacttt 40418432  T

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